| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1899984 = | 39 (0.540) | 5 (0.100) | 3/46 | 3.7 | 10.9% | coding (1558/1599 nt) | pdeD | putative c‑di‑GMP phosphodiesterase PdeD |
| ? | NC_000913 | 1900017 = | 55 (1.120) | coding (1591/1599 nt) | pdeD | putative c‑di‑GMP phosphodiesterase PdeD | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAAATGGCTGGCGGGCAGCCAACCGCCGCCCGCCCGGCATAATGGACATATCACGCCCATTATGCCGTT > NC_000913/1899950‑1900018 | cAAATGGCTGGCGGGCAGCCAACCGCCgcccgccc > 1:1298799/1‑35 (MQ=255) tggctggcGGGCAGCCAACCGCCGCCCGCCCGGCa < 1:231582/35‑1 (MQ=255) tggctggcGGGCAGCCAACCGCCGCCCGCCCGGCa < 1:4696054/35‑1 (MQ=255) gctggcGGGCAGCCAACCGCCGCCCGCCCGGCATa < 1:7799469/35‑1 (MQ=255) ctggcGGGCAGCCAGCCGCCGCCCGCCCGGCATaa < 1:1307865/35‑1 (MQ=255) ctggcGGGCAGCCAACCGCCGCCCGCCCGGCATaa < 1:1194730/35‑1 (MQ=255) ctggcGGGCAGCCAACCGCCGCCCGCCCGGCATaa < 1:6471720/35‑1 (MQ=255) ctggcGGGCAGCCAACCGCCGCCCGCCCGGCATaa < 1:4151338/35‑1 (MQ=255) tggcGGGCAGCCAACCGCCGCCCGCCCGGCATAAt < 1:86908/35‑1 (MQ=255) tggcGGGCAGCCAACCGCCGCCCGCCCGGCATAAt < 1:3088587/35‑1 (MQ=255) gcGGGCAGCCAACCGCCGCCCGCCCGGCATAATgg > 1:2457904/1‑35 (MQ=255) cGGGCAGCCAACCGCCGCCCGCCCGGCATAATGGa < 1:247474/35‑1 (MQ=255) cGGGCAGCCAACCGCCGCCCGCCCGGCATAATGGa < 1:4384508/35‑1 (MQ=255) ggCAGCCAACCGCCGCCCGCCCGGCATAAAGGGCa > 1:4663413/1‑35 (MQ=37) cAGCCAACCGCCGCCCGCCCGGCATAATGGACata < 1:2730325/35‑1 (MQ=255) aGCCAACCGCCGCCCGCCCGGCATAATGGACatat > 1:5302723/1‑35 (MQ=255) aGCCAACCGCCGCCCGCCCGGCATAATGGACatat < 1:3359255/35‑1 (MQ=255) gCCAACCGCCGCCCGCCCGGCATAATGGACATATc < 1:336101/35‑1 (MQ=255) gCCAACCGCCGCCCGCCCGGCATAATGGACATATc < 1:5562266/35‑1 (MQ=255) gCCAACCGCCGCCCGCCCGGCATAATGGACATATc < 1:7283018/35‑1 (MQ=255) ccAACCGCCGCCCGCCCGGCATAATGGACATATCa < 1:3133445/35‑1 (MQ=255) ccAACCGCCGCCCGCCCGGCATAATGGACATATCa < 1:1628436/35‑1 (MQ=255) aaCCGCCGCCCGCCCGGCATAATGGACATATCACg < 1:3975250/35‑1 (MQ=255) aCCGCCGCCCGCCCGGCATAATGGACATATCACGc > 1:5178444/1‑35 (MQ=255) cgccgcCCGCCCGGCATAATGGACATATCACGccc < 1:1433733/35‑1 (MQ=255) ccgcccgcCCGGCATAATGGACATATCACGCCCAt < 1:6094150/35‑1 (MQ=255) ccgcccgcCCGGCATAATGGACATATCACGCCCAt < 1:3066341/35‑1 (MQ=255) cgcccgccCGGCATAATGGACATATCACGCCCAtt < 1:4136578/35‑1 (MQ=255) gcccgcccGGCATAATGGACATATCCCGCCCATTa < 1:478352/35‑1 (MQ=255) cccgcccgGCATAATGGACATATCACGCCCATTAt < 1:344111/35‑1 (MQ=255) ccgcccgGCATAATGGACATATCACGCCCATTATg < 1:205032/35‑1 (MQ=255) ccgcccgGCATAATGGACATATCACGCCCATTATg < 1:4636122/35‑1 (MQ=255) ccgcccgGCATAATGGACATATCACGCCCATTATg < 1:241710/35‑1 (MQ=255) cgcccgGCATAATGGACATATCACGCCCATTATGc < 1:5981279/35‑1 (MQ=255) gcccgGCATAATGGACATATCACGCCCATTATGcc < 1:383371/35‑1 (MQ=255) cccgGCATAATGGACATATCACGCCCATTATGCcg > 1:5103086/1‑35 (MQ=255) cccgGCATAATGGACATATCACGCCCATTATGCcg < 1:6905883/35‑1 (MQ=255) ccgGCATAATGGACATATCACGCCCATTATGCcgt < 1:4181813/35‑1 (MQ=255) ccgGCATAATGGACATATCACGCCCATTATGCcgt < 1:7754315/35‑1 (MQ=255) acgGCATAATGGACATATCACGCCCATTATGCcgt > 1:715104/2‑35 (MQ=255) acgGCATAATGGACATATCACGCCCATTATGCcgt > 1:2896141/2‑35 (MQ=255) cgGCATAATGGACATATCACGCCCATTATGCcgtt > 1:4292626/1‑35 (MQ=255) cgGCATAATGGACATATCACGCCCATTATGCcgta > 1:36305/1‑34 (MQ=255) | CAAATGGCTGGCGGGCAGCCAACCGCCGCCCGCCCGGCATAATGGACATATCACGCCCATTATGCCGTT > NC_000913/1899950‑1900018 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |