| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3654539 = | 99 (1.370) | 5 (0.110) | 3/44 | 3.6 | 6.8% | intergenic (+12/‑144) | slp/dctR | starvation lipoprotein/putative DNA‑binding transcriptional regulator DctR |
| ? | NC_000913 | 3654568 = | 74 (1.580) | intergenic (+41/‑115) | slp/dctR | starvation lipoprotein/putative DNA‑binding transcriptional regulator DctR | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 108 total aligned reads displayed.
TAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCAT > NC_000913/3654505‑3654573 | tAACACCTGAGCTGGTCAAATAACACCACCGAAag > 1:4673716/1‑35 (MQ=255)tAACACCTGAGCTGGTCAAATAACACCACCGAAag > 1:661757/1‑35 (MQ=255)tAACACCTGAGCTGGTCAAATAACACCACCGAAag < 1:4477632/35‑1 (MQ=255)tAACACCTGAGCTGGTCAAATAACACCACCGAAag < 1:1983871/35‑1 (MQ=255) aaCACCTGAGCTGGTCAAATAACACCACCGAAaga < 1:2642339/35‑1 (MQ=255) aaCACCTGAGCTGGTCAAATAACACCACCGAAaga > 1:6002479/1‑35 (MQ=255) acacCTGAGCTGGTCAAATAACACCACCGAAagat > 1:2146732/1‑35 (MQ=255) acacCTGAGCTGGTCAAATAACACCACCGAAagat > 1:2008331/1‑35 (MQ=255) acacCTGAGCTGGTCAAATAACACCACCGAAagat > 1:1896096/1‑35 (MQ=255) acacCTGAGCTGGTCAAATAACACCACCGAAagat > 1:7708682/1‑35 (MQ=255) acacCTGAGCTGGTCAAATAACACCACCGAAagat > 1:533879/1‑35 (MQ=255) cacCTGAGCTGGTCAAATAACACCACCGAAagatg < 1:801545/35‑1 (MQ=255) cacCTGAGCTGGTCAAATAACACCACCGAAagatg > 1:3614819/1‑35 (MQ=255) cacCTGAGCTGGTCAAATAACACCACCGAAagatg < 1:6290141/35‑1 (MQ=255) ccTGAGCTGGTCAAATAACACCACCGAAagatgcc > 1:4323793/1‑34 (MQ=255) ccTGAGCTGGTCAAATAACACCACCGAAagatgca > 1:5193954/1‑35 (MQ=255) ccTGAGCTGGTCAAATAACACCACCGAAagatgca < 1:3063615/35‑1 (MQ=255) cTGAGCTGGTCAAATAACACCACCGAAagatgcag < 1:6542789/35‑1 (MQ=255) cTGAGCTGGTCAAATAACACCACCGAAagatgcag < 1:5538056/35‑1 (MQ=255) tGAGCTGGTCAAATAACACCACCGAAagatgcaga < 1:7206982/35‑1 (MQ=255) tGAGCTGGTCAAATAACACCACCGAAagatgcaga < 1:7812759/35‑1 (MQ=255) tGAGCTGGTCAAATAACACCACCGAAagatgcaga < 1:5483068/35‑1 (MQ=255) aGCTGGTCAAATAACACCACCGAAagatgcagatg > 1:6284949/1‑35 (MQ=255) cTGGTCAAATAACACCACCGAAAGATGCAGATGCt < 1:2495326/35‑1 (MQ=255) cTGGTCAAATAACACCACCGAAAGATGCAGATGCt > 1:6643086/1‑35 (MQ=255) cTGGTCAAATAACACCACCGAAAGATGCAGATGCt > 1:1296269/1‑35 (MQ=255) tGGTCAAATAACACCACCGAAAGATGCAGATGCtt < 1:3562257/35‑1 (MQ=255) tGGTCAAATAACACCACCGAAAGATGCAGATGCtt < 1:1204346/35‑1 (MQ=255) tGGTCAAATAACACCACCGAAAGATGCAGATGCtt < 1:7411327/35‑1 (MQ=255) tGGTCAAATAACACCACCGAAAGATGCAGATGCtt < 1:7252720/35‑1 (MQ=255) tGGTCAAATAACACCACCGAAAGATGCAGATGCtt < 1:7050222/35‑1 (MQ=255) tGGTCAAATAACACCACCGAAAGATGCAGATGCtt > 1:2307723/1‑35 (MQ=255) ggTCAAATAACACCACCGAAAGATGCAGATGCttt < 1:4986772/35‑1 (MQ=255) gTCAAATAACACCACCGAAAGATGCAGATGCTTtc > 1:333288/1‑35 (MQ=255) gTCAAATAACACCACCGAAAGATGCAGATGCTTtc > 1:347928/1‑35 (MQ=255) tCAAATAACACCACCGAAAGATGCAGATGCTTtct > 1:6024788/1‑35 (MQ=255) tCAAATAACACCACCGAAAGATGCAGATGCTTtct < 1:2565024/35‑1 (MQ=255) tCAAATAACACCACCGAAAGATGCAGATGCTTtct < 1:4306071/35‑1 (MQ=255) tCAAATAACACCACCGAAAGATGCAGATGCTTtct > 1:7461873/1‑35 (MQ=255) tCAAATAACACCACCGAAAGATGCAGATGCTTtct < 1:7564040/35‑1 (MQ=255) aaaTAACACCACCGAAAGATGCAGATGCTTTCTCa > 1:610597/1‑35 (MQ=255) aaaTAACACCACCGAAAGATGCAGATGCTTTCTCa > 1:2209230/1‑35 (MQ=255) aaaTAACACCACCGAAAGATGCAGATGCTTTCTCa > 1:5471697/1‑35 (MQ=255) aaaTAACACCACCGAAAGATGCAGATGCTTTCTCa < 1:256863/35‑1 (MQ=255) aaaTAACACCACCGAAAGATGCAGATGCTTTCTCa > 1:4740852/1‑35 (MQ=255) aaTAACACCACCGAAAGATGCAGATGCTTTCTCAg > 1:2296285/1‑35 (MQ=255) aaTAACACCACCGAAAGATGCAGATGCTTTCTCAg > 1:7560124/1‑35 (MQ=255) aaTAACACCACCGAAAGATGCAGATGCTTTCTCAg > 1:504130/1‑35 (MQ=255) aTAACACCACCGAAAGATGCAGATGCTTTCTTAGc > 1:82521/1‑35 (MQ=255) aTAACACCACCGAAAGATGCAGATGCTTTCTCAGc > 1:7269174/1‑35 (MQ=255) aTAACACCACCGAAAGATGCAGATGCTTTCTCAGc > 1:6184227/1‑35 (MQ=255) aTAACACCACCGAAAGATGCAGATGCTTTCTCAGc > 1:626008/1‑35 (MQ=255) aTAACACCACCGAAAGATGCAGATGCTTTCTCAGc > 1:4327796/1‑35 (MQ=255) aTAACACCACCGAAAGATGCAGATGCTTTCTCAGc > 1:4430121/1‑35 (MQ=255) tAACACCACCGAAAGATGCAGATGCTTTCTCCGCa > 1:4024772/1‑35 (MQ=255) tAACACCACCGAAAGATGCAGATGCTTTCTCAGCa < 1:4826773/35‑1 (MQ=255) tAACACCACCGAAAGATGCAGATGCTTTCTCAGCa > 1:3689533/1‑35 (MQ=255) tAACACCACCGAAAGATGCAGATGCTTTCTCAGCa > 1:3331577/1‑35 (MQ=255) tAACACCACCGAAAGATGCAGATGCTTTCTCAGCa < 1:5497048/35‑1 (MQ=255) tAACACCACCGAAAGATGCAGATGCTTTCTCAGCa > 1:5838475/1‑35 (MQ=255) aaCACCACCGAAAGATGCAGATGCTTTCTCAGCAt < 1:4538542/35‑1 (MQ=255) aaCACCACCGAAAGATGCAGATGCTTTCTCAGCAt < 1:4215822/35‑1 (MQ=255) aaCACCACCGAAAGATGCAGATGCTTTCTCAGCAt > 1:7582894/1‑35 (MQ=255) acacCACCGAAAGATGCAGATGCTTTTTCAGCATc > 1:3994262/1‑35 (MQ=255) acacCACCGAAAGATGCAGATGCTTTCTCAGCATc > 1:176698/1‑35 (MQ=255) acacCACCGAAAGATGCAGATGCTTTCTCAGCATc < 1:7081532/35‑1 (MQ=255) acacCACCGAAAGATGCAGATGCTTTCTCAGCATc < 1:1232456/35‑1 (MQ=255) acacCACCGAAAGATGCAGATGCTTTCTCAGCATc > 1:2390035/1‑35 (MQ=255) acacCACCGAAAGATGCAGATGCTTTCTCAGCATc < 1:2648761/35‑1 (MQ=255) acacCACCGAAAGATGCAGATGCTTTCTCAGCATc > 1:1474583/1‑35 (MQ=255) acacCACCGAAAGATGCAGATGCTTTCTCAGCATc > 1:7620868/1‑35 (MQ=255) acacCACCGAAAGATGCAGATGCTTTCTCAGCATc < 1:1442951/35‑1 (MQ=255) acacCACCGAAAGATGCAGATGCTTTCTCAGCATc > 1:5945313/1‑35 (MQ=255) accaccGAAAGATGCAGATGCTTTCTCAGCATCTg > 1:6058545/1‑35 (MQ=255) ccaccGAAAGATGCAGATGCTTTCTCAGCATCTGc > 1:6171742/1‑35 (MQ=255) ccaccGAAAGATGCAGATGCTTTCTCAGCATCTGc > 1:1763394/1‑35 (MQ=255) caccGAAAGATGCAGATGCTTTCTCAGCATCTGca < 1:1403259/35‑1 (MQ=255) caccGAAAGATGCAGATGCTTTCTCAGCATCTGca < 1:6495940/35‑1 (MQ=255) accGAAAGATGCAGATGCTTTCTCAGCATCTGcat < 1:6123147/35‑1 (MQ=255) accGAAAGATGCAGATGCTTTCTCAGCATCTGcat < 1:7225104/35‑1 (MQ=255) accGAAAGATGCAGATGCTTTCTCAGCATCTGcat < 1:6651454/35‑1 (MQ=255) cGAAAGATGCAGATGCTTTCTCAGCATCTGcatca < 1:1328600/35‑1 (MQ=255) cGAAAGATGCAGATGCTTTCTCAGCATCTGcatca < 1:1750296/35‑1 (MQ=255) gAAAGATGCAGATGCTTTCTCAGCATCTGcatcat > 1:7678325/1‑35 (MQ=255) aaaGATGCAGATGCTTTCTCAGCATCTGCATCATg < 1:2327239/35‑1 (MQ=255) aaaGATGCAGATGCTTTCTCAGCATCTGCATCATg < 1:4164547/35‑1 (MQ=255) aaaGATGCAGATGCTTTCTCAGCATCTGCATCATg > 1:5519840/1‑35 (MQ=255) aaaGATGCAGATGCTTTCTCAGCATCTGCATCATg > 1:5405297/1‑35 (MQ=255) agatgcagatgcTTTCTCAGCATCTGCATCATGCa > 1:5914052/1‑35 (MQ=255) agatgcagatgcTTTCTCAGCATCTGCATCATGCa < 1:3415035/35‑1 (MQ=255) agatgcagatgcTTTCTCAGCATCTGCATCATGCa > 1:1451222/1‑35 (MQ=255) agatgcagatgcTTTCTCAGCATCTGCATCATGCa > 1:5443241/1‑35 (MQ=255) gatgcggatgcTTTCTCAGCATCTGCATCATGCAt < 1:5559611/35‑1 (MQ=255) gatgcagatgcTTTCTCAGCATCTGCATCATGCAt < 1:4227699/35‑1 (MQ=255) gatgcagatgcTTTCTCAGCATCTGCATCATGCAt < 1:5425539/35‑1 (MQ=255) gatgcagatgcTTTCTCAGCATCTGCATCATGCAt < 1:4223913/35‑1 (MQ=255) gatgcagatgcTTTCTCAGCATCTGCATCATGCAt < 1:3147043/35‑1 (MQ=255) gatgcagatgcTTTCTCAGCATCTGCATCATGCAt < 1:2878832/35‑1 (MQ=255) gatgcagatgcTTTCTCAGCATCTGCATCATGCAt > 1:7186578/1‑35 (MQ=255) gatgcagatgcTTTCTCAGCATCTGCATCATGCAt < 1:6738438/35‑1 (MQ=255) | TAACACCTGAGCTGGTCAAATAACACCACCGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCAT > NC_000913/3654505‑3654573 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |