| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3654539 = | 99 (1.370) | 5 (0.110) | 3/44 | 3.6 | 6.8% | intergenic (+12/‑144) | slp/dctR | starvation lipoprotein/putative DNA‑binding transcriptional regulator DctR |
| ? | NC_000913 | 3654568 = | 74 (1.580) | intergenic (+41/‑115) | slp/dctR | starvation lipoprotein/putative DNA‑binding transcriptional regulator DctR | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 131 total aligned reads displayed.
CGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAAC > NC_000913/3654534‑3654602 | cGAAAGATGCAGATGCTTTCTCAGCATCTGcatca < 1:1750296/35‑1 (MQ=255) gAAAGATGCAGATGCTTTCTCAGCATCTGcatcat > 1:7678325/1‑35 (MQ=255) aaaGATGCAGATGCTTTCTCAGCATCTGCATCATg > 1:5519840/1‑35 (MQ=255) agatgcagatgcTTTCTCAGCATCTGCATCATGCa > 1:5443241/1‑35 (MQ=255) agatgcagatgcTTTCTCAGCATCTGCATCATGCa > 1:1451222/1‑35 (MQ=255) agatgcagatgcTTTCTCAGCATCTGCATCATGCa > 1:5914052/1‑35 (MQ=255) gatgcagatgcTTTCTCAGCATCTGCATCATGCAt < 1:2878832/35‑1 (MQ=255) gatgcagatgcTTTCTCAGCATCTGCATCATGCAt < 1:4227699/35‑1 (MQ=255) gatgcagatgcTTTCTCAGCATCTGCATCATGCAt < 1:4223913/35‑1 (MQ=255) gatgcagatgcTTTCTCAGCATCTGCATCATGCAt < 1:5425539/35‑1 (MQ=255) gatgcagatgcTTTCTCAGCATCTGCATCATGCAt < 1:3147043/35‑1 (MQ=255) gatgcagatgcTTTCTCAGCATCTGCATCATGCAt > 1:7186578/1‑35 (MQ=255) atgcagatgcTTTCTCAGCATCTGCATCATGCAtt > 1:4791116/1‑35 (MQ=255) tgcagatgcTTTCTCAGCATCTGCATCATGCATTa > 1:2397348/1‑35 (MQ=255) tgcagatgcTTTCTCAGCATCTGCATCATGCATTa < 1:2797009/35‑1 (MQ=255) tgcagatgcTTTCTCAGCATCTGCATCATGCATTa < 1:5902723/35‑1 (MQ=255) cagatgcTTTCTCAGCATCTGCATCATGCATTACa < 1:4434407/35‑1 (MQ=255) agatgcTTTCTCAGCATCTGCATCATGCATTACAt < 1:2890847/35‑1 (MQ=255) gatgcTTTCTCAGCATCTGCATCATGCATTTCATc > 1:442311/1‑35 (MQ=255) gatgcTTTCTCAGCATCTGCATCATGCATTACATc < 1:1196396/35‑1 (MQ=255) gatgcTTTCTCAGCATCTGCATCATGCATTACATc < 1:5325380/35‑1 (MQ=255) atgcTTTCTCAGCATCTGCATCATGCATTACATCa > 1:2277296/1‑35 (MQ=255) atgcTTTCTCAGCATCTGCATCATGCATTACATCa < 1:7705634/35‑1 (MQ=255) atgcTTTCTCAGCATCTGCATCATGCATTACATCa < 1:7411273/35‑1 (MQ=255) tgcTTTCTCAGCATCTGCATCATGCATTACATCaa > 1:2479436/1‑35 (MQ=255) gcTTTCTCAGCATCTGCATCATGCATTACATCaaa < 1:3238544/35‑1 (MQ=255) cTTTCTCAGCATCTGCATCATGCATTACATCAAAt < 1:2366408/35‑1 (MQ=255) cTTTCTCAGCATCTGCATCATGCATTACATCAAAt < 1:4143951/35‑1 (MQ=255) cTTTCTCAGCATCTGCATCATGCATTACATCAAAt < 1:6557553/35‑1 (MQ=255) cTTTCTCAGCATCTGCATCATGCATTACATCAAAt < 1:522980/35‑1 (MQ=255) cTTTCTCAGCATCTGCATCATGCATTACATCAAAt < 1:7274731/35‑1 (MQ=255) cTTTCTCAGCATCTGCATCATGCATTACATCAAAt < 1:2517164/35‑1 (MQ=255) tttCTCAGCATCTGCATCATGCATTACATCAAAtt < 1:840149/35‑1 (MQ=255) tttCTCAGCATCTGCATCATGCATTACATCAAAtt > 1:2782449/1‑35 (MQ=255) ttCTCAGCATCTGCATCATGCATTACATCAAATTa > 1:7402830/1‑35 (MQ=255) ttCTCAGCATCTGCATCATGCATTACATCAAATTa > 1:5496842/1‑35 (MQ=255) tctcAGCATCTGCATCATGCATTACATCAAATTaa < 1:3556992/35‑1 (MQ=255) tctcAGCATCTGCATCATGCATTACATCAAATTaa > 1:4699008/1‑35 (MQ=255) tctcAGCATCTGCATCATGCATTACATCAAATTaa > 1:5533100/1‑35 (MQ=255) tctcAGCATCTGCATCATGCATTACATCAAATTaa > 1:4511500/1‑35 (MQ=255) tctcAGCATCTGCATCATGCATTACATCAAATTaa > 1:4095531/1‑35 (MQ=255) tctcAGCATCTGCATCATGCATTACATCAAATTaa > 1:5034983/1‑35 (MQ=255) tctcAGCATCTGCATCATGCATTACATCAAATTaa > 1:6171379/1‑35 (MQ=255) ctcAGCATCTGCATCATGCATTACATCAAATTAAt < 1:3373750/35‑1 (MQ=255) ctcAGCATCTGCATCATGCATTACATCAAATTAAt > 1:1984013/1‑35 (MQ=255) tcAGCATCTGCATCATGCATTACATCAAATTAATa > 1:5023080/1‑35 (MQ=255) tcAGCATCTGCATCATGCATTACATCAAATTAATa < 1:4148798/35‑1 (MQ=255) tcAGCATCTGCATCATGCATTACATCAAATTAATa < 1:3471351/35‑1 (MQ=255) tcAGCATCTGCATCATGCATTACATCAAATTAATa < 1:3060891/35‑1 (MQ=255) tcAGCATCTGCATCATGCATTACATCAAATTAATa < 1:1759200/35‑1 (MQ=255) tcAGCATCTGCATCATGCATTACATCAAATTAATa < 1:7741675/35‑1 (MQ=255) aGCATCTGCATCATGCATTACATCAAATTAATaca < 1:5810682/35‑1 (MQ=255) aGCATCTGCATCATGCATTACATCAAATTAATaca > 1:6253224/1‑35 (MQ=255) aGCATCTGCATCATGCATTACATCAAATTAATaca > 1:664026/1‑35 (MQ=255) aGCATCTGCATCATGCATTACATCAAATTAATaca < 1:6671485/35‑1 (MQ=255) aGCATCTGCATCATGCATTACATCAAATTAATaca > 1:841575/1‑35 (MQ=255) aGCATCTGCATCATGCATTACATCAAATTAATaca < 1:4976815/35‑1 (MQ=255) cATCTGCATCATGCATTACATCAAATTAATAcaca > 1:4809259/1‑35 (MQ=255) cATCTGCATCATGCATTACATCAAATTAATAcaca < 1:5984008/35‑1 (MQ=255) cATCTGCATCATGCATTACATCAAATTAATAcaca < 1:3565682/35‑1 (MQ=255) aTCTGCATCATGCATTACATCAAATTAATACACAg < 1:1487711/35‑1 (MQ=255) aTCTGCATCATGCATTACATCAAATTAATACACAg < 1:2094905/35‑1 (MQ=255) aTCTGCATCATGCATTACATCAAATTAATACACAg < 1:2462565/35‑1 (MQ=255) aTCTGCATCATGCATTACATCAAATTAATACACAg < 1:5445220/35‑1 (MQ=255) aTCTGCATCATGCATTACATCAAATTAATACACAg < 1:6413462/35‑1 (MQ=255) tCTGCATCATGCATTACATCAAATTAATACACAGt < 1:1037094/35‑1 (MQ=255) tCTGCATCATGCATTACATCAAATTAATACACAGt > 1:2818519/1‑35 (MQ=255) tCTGCATCATGCATTACATCAAATTAATACACAGt < 1:6444571/35‑1 (MQ=255) tCTGCATCATGCATTACATCAAATTAATACACAGt > 1:366584/1‑35 (MQ=255) tCTGCATCATGCATTACATCAAATTAATACACAGt > 1:493303/1‑35 (MQ=255) tCTGCATCATGCATTACATCAAATTAATACACAGt < 1:4811810/35‑1 (MQ=255) cTGCATCATGCATTACATCAAATTAATACCCAGTa > 1:4217448/1‑35 (MQ=255) cTGCATCATGCATTACATCAAATTAATACACAGTa > 1:71172/1‑35 (MQ=255) cTGCATCATGCATTACATCAAATTAATACACAGTa > 1:533662/1‑35 (MQ=255) tGCATCATGCATTACATCAAATTAATACACAGTaa > 1:3830558/1‑35 (MQ=255) tGCATCATGCATTACATCAAATTAATACACAGTaa > 1:1092413/1‑35 (MQ=255) gCATCATGCATTACATCAAATTAATACACAGTAAg < 1:3214346/35‑1 (MQ=255) gCATCATGCATTACATCAAATTAATACACAGTAAg < 1:1313435/35‑1 (MQ=255) gCATCATGCATTACATCAAATTAATACACAGTAAg > 1:576575/1‑35 (MQ=255) catcatGCATTACATCAAATTAATACACAGTAAGc < 1:3358149/35‑1 (MQ=255) catcatGCATTACATCAAATTAATACACAGTAAGc > 1:6197678/1‑35 (MQ=255) catcatGCATTACATCAAATTAATACACAGTAAGc > 1:6440648/1‑35 (MQ=255) catcatGCATTACATCAAATTAATACACAGTAAGc > 1:4223060/1‑35 (MQ=255) catcatGCATTACATCAAATTAATACACAGTAAGc < 1:1505866/35‑1 (MQ=255) catcatGCATTACATCAAATTAATACACAGTAAGc < 1:7385143/35‑1 (MQ=255) catcatGCATTACATCAAATTAATACACAGTAAGc > 1:7377896/1‑35 (MQ=255) catcatGCATTACATCAAATTAATACACAGTAAGc > 1:2382361/1‑35 (MQ=255) atcatGCATTACATCAAATTAATACACAGTAAGCt < 1:5564812/35‑1 (MQ=255) atcatGCATTACATCAAATTAATACACAGTAAGCt > 1:3668236/1‑35 (MQ=255) atcatGCATTACATCAAATTAATACACAGTAAGCt < 1:3179498/35‑1 (MQ=255) tcatGCATTACATCAAATTAATACACAGTAAGCTa > 1:713925/1‑35 (MQ=255) catGCATTACATCAAATTAATACACAGTAAGCTaa < 1:2487459/35‑1 (MQ=255) catGCATTACATCAAATTAATACACAGTAAGCTaa < 1:3373345/35‑1 (MQ=255) atGCATTACATCAAATTAATACACAGTAAGCTAAc > 1:5391141/1‑35 (MQ=255) atGCATTACATCAAATTAATACACAGTAAGCTAAc < 1:7168314/35‑1 (MQ=255) atGCATTACATCAAATTAATACACAGTAAGCTAAc < 1:163058/35‑1 (MQ=255) atGCATTACATCAAATTAATACACAGTAAGCTAAc > 1:7585242/1‑35 (MQ=255) atGCATTACATCAAATTAATACACAGTAAGCTAAc < 1:5886738/35‑1 (MQ=255) atGCATTACATCAAATTAATACACAGTAAGCTAAc < 1:4693584/35‑1 (MQ=255) atGCATTACATCAAATTAATACACAGTAAGCTAAc > 1:833860/1‑35 (MQ=255) | CGAAAGATGCAGATGCTTTCTCAGCATCTGCATCATGCATTACATCAAATTAATACACAGTAAGCTAAC > NC_000913/3654534‑3654602 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |