| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3950464 = | 71 (0.980) | 17 (0.240) | 9/68 | 2.8 | 25.6% | intergenic (+44/‑43) | ilvL/ilvX | ilvXGMEDA operon leader peptide/uncharacterized protein IlvX |
| ? | NC_000913 | = 4631789 | 28 (0.390) | coding (1057/1938 nt) | slt | soluble lytic murein transglycosylase | |||||
CTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGG > NC_000913/3950430‑3950498 | cTTAACGAACTAAGACCCCCGCACCGAAAGGTCCg < 1:2842519/35‑1 (MQ=255) ttAACGAACTAAGACCCCCGCACCGAAAGGTCCgg < 1:3502644/35‑1 (MQ=255) cgaaagagaaagatgaatggcgttactggcagggg < 1:7557459‑M1/2‑1 (MQ=255) tAACGAACTAAGACCCCCGCACCGAAAGGTCCggg > 1:379175/1‑35 (MQ=255) gaaagagaaagatgaatggcgttactggcaggggg < 1:449134‑M1/3‑1 (MQ=255) aaagagaaagatgaatggcgttactggcagggggg < 1:6487079‑M1/4‑1 (MQ=255) aaagagaaagatgaatggcgttactggcagggggg < 1:444287‑M1/4‑1 (MQ=255) aaagagaaagatgaatggcgttactggcagggggg < 1:4191996‑M1/4‑1 (MQ=255) aaCGAACTAAGACCCCCGCACCGAAAGGTCCgggg > 1:4806066/1‑35 (MQ=255) aagagaaagatgaatggcgttactggcaggggggg < 1:7116817‑M1/5‑1 (MQ=255) aagagaaagatgaatggcgttactggcaggggggg < 1:5644267‑M1/5‑1 (MQ=255) aCGAACTAAGACCCCCGCACCGAAAGGTCCggggg < 1:904486/35‑1 (MQ=255) aCGAACTAAGACCCCCGCACCGAAAGGTCCggggg > 1:7388702/1‑35 (MQ=255) agagaaagatggatggcgttactggcagggggggg < 1:5394456‑M1/6‑2 (MQ=255) agagaaagatgaatggcgttactggcagggggggg < 1:4381184‑M1/6‑2 (MQ=255) gAACTAAGACCCCCGCACCGAAAGGTCCGGGGGtt < 1:3948932/35‑1 (MQ=255) gAACTAAGACCCCCGCACCGAAAGGTCCGGGGGtt < 1:3484832/35‑1 (MQ=255) aaCTAAGACCCCCGCACCGAAAGGTCCGGGGGttt > 1:6695159/1‑35 (MQ=255) aaCTAAGACCCCCGCACCGAAAGGTCCGGGGGttt > 1:7343586/1‑35 (MQ=255) gaaagatgaatggcgttactggcaggGGGGGgttt < 1:2684545‑M1/9‑1 (MQ=255) aCTAAGCCCCCCGCGCCGAAAGGTCCGGGGGtttt < 1:4115610/35‑1 (MQ=25) aCTAAGACCCCCGCACCGAAAGGTCCGGGGGtttt > 1:6158227/1‑35 (MQ=255) aCTAAGACCCCCGCACCGAAAGGTCCGGGGGtttt > 1:2622819/1‑35 (MQ=255) aCTAAGACCCCCGCACCGAAAGGCCCGGGGGgttt > 1:3118793/1‑35 (MQ=38) aCTAAGACCCCCGCACCGAAAAGTCCGGGGGtttt > 1:3278286/1‑35 (MQ=255) cTAAGACCCCCGCACCGAAAGGTCCGGGGGttttt < 1:7620874/35‑1 (MQ=255) cTAAGACCCCCGCACCGAAAGGTCCGGGGGttttt < 1:4997765/35‑1 (MQ=255) cTAAGACCCCCGCACCGAAAGGTCCGGGGGttttt < 1:2099331/35‑1 (MQ=255) aaagatgaatggcgttactggcaggGGGGGttttt < 1:7226863‑M1/10‑1 (MQ=255) tAAGACCCCCGCACCGAAAGGTCCGGGGGtttttt < 1:2572232/35‑1 (MQ=255) aagatgaatggcgttactggcaggGGGGGtttttt < 1:6907900‑M1/11‑1 (MQ=255) agatgaatggcgttactggcaggGGGGtgtttttg < 1:7748630‑M1/12‑2 (MQ=255) aaGACCCCCGCACCGAAAGGTCCGGGGGttttttt > 1:2406233/1‑35 (MQ=255) gatgaatggcgttactggcaggGGGGTttattttt < 1:184535‑M1/13‑1 (MQ=255) gatgaatggcgttactggcaggGGGGGtttttttt < 1:5529506‑M1/13‑1 (MQ=255) aGACCCCCGCACCGAAAGGTCCGGGGGtttttttt > 1:3760253/1‑35 (MQ=255) aGACCCCCGCACCGAAAGGTCCGGGGGtttttttt < 1:508175/35‑1 (MQ=255) aGACCCCCGCACCGAAAGGTCCGGGGGgttttttt > 1:3106252/1‑35 (MQ=255) gACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTg > 1:6999807/1‑35 (MQ=255) atgaatggcgttactggcaggGGGGGTTTTTTTTg < 1:5557622‑M1/14‑1 (MQ=255) atgaatggcgttactggcaggCGGGGGTTTTTTTg < 1:5457279‑M1/14‑1 (MQ=255) aCCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGa < 1:7059295/35‑1 (MQ=255) cccGCACCGAAAGGTCCGGGGGTTTTTTTTGACCt < 1:1909023/35‑1 (MQ=255) cccGCACCGAAAGGTCCGGGGGTTTTTTTTGACCt < 1:7293928/35‑1 (MQ=255) ccGCACCGAAAGGTCCGGGGGTTTTTTTTGACCtt < 1:6727945/35‑1 (MQ=255) cGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTa < 1:4746799/35‑1 (MQ=255) cGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTa < 1:1439067/35‑1 (MQ=255) cGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTa < 1:2830750/35‑1 (MQ=255) cGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTa < 1:6191657/35‑1 (MQ=255) cGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTa < 1:3635332/35‑1 (MQ=255) gCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaa < 1:2143369/35‑1 (MQ=255) gCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaa < 1:2896721/35‑1 (MQ=255) gCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaa < 1:3488482/35‑1 (MQ=255) cACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaa < 1:3718092/35‑1 (MQ=255) cACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaa < 1:2373823/35‑1 (MQ=255) cACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaa > 1:7029232/1‑35 (MQ=255) cACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaa < 1:3566064/35‑1 (MQ=255) aCCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaa < 1:1988842/35‑1 (MQ=255) ccGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaaa > 1:7459805/1‑35 (MQ=255) ccGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaaa > 1:6963197/1‑35 (MQ=255) ccGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaaa > 1:5230374/1‑35 (MQ=255) ccGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaaa < 1:5689443/35‑1 (MQ=255) ccGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaaa > 1:5395876/1‑35 (MQ=255) ccGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaaa > 1:3044194/1‑35 (MQ=255) ccGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaaa > 1:4271727/1‑35 (MQ=255) aaaGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt > 1:1039944/1‑35 (MQ=255) aaaGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt < 1:872809/35‑1 (MQ=255) aaaGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt < 1:7797785/35‑1 (MQ=255) aaaGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt > 1:2432091/1‑35 (MQ=255) aaaGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt < 1:1133241/35‑1 (MQ=255) aaaGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt < 1:3092667/35‑1 (MQ=255) aaaGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt < 1:1284489/35‑1 (MQ=255) aaaGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt < 1:1906352/35‑1 (MQ=255) aaaGGTCCGGGGGTTTTTTTTGACCTTAAAAACAt < 1:7117213/35‑1 (MQ=255) aaGGTCCGGGGGTTTTTTTTGACCTTAAAAACATa > 1:448948/1‑35 (MQ=255) aaGGTCCGGGGGTTTTTTTTGACCTTAAAAACATa > 1:5099439/1‑35 (MQ=255) aaGGTCCGGGGGTTTTTTTTGACCTTAAAAACATa > 1:5845566/1‑35 (MQ=255) aGGTCCGGGGGTTTTTTTTGACCTTAAAAACATaa < 1:1347308/35‑1 (MQ=255) aGGTCCGGGGGTTTTTTTTGACCTTAAAAACATaa < 1:4636528/35‑1 (MQ=255) aGGTCCGGGGGTTTTTTTTGACCTTAAAAACATaa > 1:1478836/1‑35 (MQ=255) ggTCCGGGGGTTTTTTTTGACCTTAAAAACATAAc > 1:1878391/1‑35 (MQ=255) ggTCCGGGGGTTTTTTTTGACCTTAAAAACATAAc < 1:3803173/35‑1 (MQ=255) gTCCGGGGGTTTTTTTTGACCTTAAAAACATAAcc < 1:6944183/35‑1 (MQ=255) gTCCGGGGGTTTTTTTTGACCTTAAAAACATAAcc > 1:6820882/1‑35 (MQ=255) gTCCCGGGGGTTTTTTTGACCTTAAAAACATAAcc < 1:2183687/35‑1 (MQ=25) tCCGGGGGTTTTTTTTGACCTTAAAAACATAACCg > 1:6863040/1‑35 (MQ=255) ccGGGGGTTTTTTTTGACCTTAAAAACATAACCga > 1:5803575/1‑35 (MQ=255) cGGGGGTTTTTTTTGACCTTAAAAACATAACCgag < 1:5447828/35‑1 (MQ=255) gggggTTTTTTTTGACCTTAAAAACATAACCgagg > 1:5729455/1‑35 (MQ=255) | CTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGG > NC_000913/3950430‑3950498 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |