New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2066304NA (NA)103 (1.420) 45/68 0.0 100% noncoding (1050/1195 nt) IS5 repeat region
?NC_000913 2080592 = 0 (0.000)intergenic (‑1/+197) yeeA/sbmC putative transporter YeeA/DNA gyrase inhibitor

Only 100 of 106 total aligned reads displayed.

TTTCAAACGGGCTTAATGACTTATCGGCACGCACGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATA  >  NC_000913/2080558‑2080626
                                  |                                  
gtttcttcgccatttaaggcgttatccccagtttg                                    <  1:5396045‑M2/1‑1 (MQ=255)
 tttcttcgccatttaaggcgttatccccagtttGc                                   >  1:6604853‑M2/34‑35 (MQ=255)
  ttcttcgccatttaaggcgttatccccagtttGCa                                  <  1:2009623‑M2/3‑1 (MQ=255)
  ttcttcgccatttaaggcgttatccccagtttGCa                                  <  1:4567090‑M2/3‑1 (MQ=255)
  ttcttcgccatttaaggcgttatccccagtttGCa                                  >  1:1322184‑M2/33‑35 (MQ=255)
   tcttcgccatttaaggcgttatccccagtttGCAg                                 >  1:145358‑M2/32‑35 (MQ=255)
   tcttcgccatttaaggcgttatccccagtttGCAg                                 <  1:6376330‑M2/4‑1 (MQ=255)
   tcttcgccatttaaggcgttatccccagtttGCAg                                 <  1:6358724‑M2/4‑1 (MQ=255)
   tcttcgccatttaaggcgttatccccagtttGCAg                                 >  1:7151173‑M2/32‑35 (MQ=255)
   tcttcgccatttaaggcgttatccccagtttGCAg                                 >  1:2948346‑M2/32‑35 (MQ=255)
   tcttcgccatttaaggcgttatccccagtttGCAg                                 >  1:3770815‑M2/32‑35 (MQ=255)
   tcttcgccatttaaggcgttatccccagtttGCAg                                 >  1:1026606‑M2/32‑35 (MQ=255)
    cttcgccatttaaggcgttatccccagtttGCAGa                                <  1:4702605‑M2/5‑1 (MQ=255)
    cttcgccatttaaggcgttatccccagtttGCAGa                                <  1:7570795‑M2/5‑1 (MQ=255)
    cttcgccatttaaggcgttatccccagtttGCAGa                                <  1:2279743‑M2/5‑1 (MQ=255)
       cgccatttaaggcgttatccccagtttGGAGAAAc                             <  1:3967608‑M2/8‑1 (MQ=255)
       cgccatttaaggcgttatccccagtttGCAGAAAc                             <  1:4366136‑M2/8‑1 (MQ=255)
        gccatttaaggcgttatccccagtttGCAGAAACt                            <  1:1096403‑M2/9‑1 (MQ=255)
        gccatttaaggcgttatccccagtttGCAGAAACt                            <  1:5211825‑M2/9‑1 (MQ=255)
        gccatttaaggcgttatccccagtttGCAGAAACt                            <  1:7208939‑M2/9‑1 (MQ=255)
         ccatttaaggcgttatccccagtttGCAGAAACTc                           <  1:3828431‑M2/10‑1 (MQ=255)
           atttaaggcgttatccccagtttGCAGAAACTCCg                         <  1:6034193‑M2/12‑1 (MQ=255)
           atttaaggcgttatccccagtttGCAGAAACTCCg                         <  1:1159293‑M2/12‑1 (MQ=255)
           atttaaggcgttatccccagtttGCAGAAACTCCg                         <  1:504736‑M2/12‑1 (MQ=255)
            tttaaggcgttatccccagtttGCAGAAACTCCGt                        <  1:184798‑M2/13‑1 (MQ=255)
            tttaaggcgttatccccagtttGCAGAAACTCCGt                        <  1:4005873‑M2/13‑1 (MQ=255)
            tttaaggcgttatccccagtttGCAGAAACTCCGt                        >  1:777356‑M2/23‑35 (MQ=255)
            tttaaggcgttatccccagtttGCAGAAACTCCGt                        >  1:1193743‑M2/23‑35 (MQ=255)
            tttaaggcgttatccccagtttGCAGAAACTCCGt                        <  1:1442050‑M2/13‑1 (MQ=255)
            tttaaggcgttatccccagtttGCAGAAACTCCGt                        <  1:4652015‑M2/13‑1 (MQ=255)
              taaggcgttatccccagtttGCAGAAACTCCGTaa                      <  1:4023339‑M2/15‑1 (MQ=255)
              taaggcgttatccccagtttGCAGAAACTCCGTaa                      <  1:2085736‑M2/15‑1 (MQ=255)
              taaggcgttatccccagtttGCAGAAACTCCGTaa                      <  1:4645667‑M2/15‑1 (MQ=255)
              taaggcgttatccccagtttGCAGAAACTCCGTaa                      >  1:5231692‑M2/21‑35 (MQ=255)
              taaggcgttatccccagtttGCAGAAACTCCGTaa                      <  1:5301423‑M2/15‑1 (MQ=255)
              taaggcgttatccccagtttGCAGAAACTCCGTaa                      <  1:6659331‑M2/15‑1 (MQ=255)
              taaggcgttatccccagtttGCAGAAACTCCGTaa                      >  1:1796538‑M2/21‑35 (MQ=255)
               aaggcgttatccccagtttGCAGAAACTCCGTAAt                     <  1:7374445‑M2/16‑1 (MQ=255)
               aaggcgttatccccagtttGCAGAAACTCCGTAAt                     >  1:5320951‑M2/20‑35 (MQ=255)
               aaggcgttatccccagtttGCAGAAACTCCGTAAt                     >  1:896274‑M2/20‑35 (MQ=255)
                aggcgttatccccagtttGCAGAAACTCCGTAATg                    >  1:6421051‑M2/19‑35 (MQ=255)
                aggcgttatccccagtttGCAGAAACTCCGTAATg                    >  1:5240949‑M2/19‑35 (MQ=255)
                aggcgttatccccagtttGCAGAAACTCCGTAATg                    >  1:1265343‑M2/19‑35 (MQ=255)
                aggcgttatccccagtttGCAGAAACTCCGTAATg                    >  1:7173813‑M2/19‑35 (MQ=255)
                aggcgttatccccagtttGCAGAAACTCCGTAATg                    >  1:3034996‑M2/19‑35 (MQ=255)
                 ggcgttatccccagtttGCAGAAACTCCGTAATga                   >  1:839492‑M2/18‑35 (MQ=255)
                 ggcgttatccccagtttGCAGAAACTCCGTAATga                   >  1:6633211‑M2/18‑35 (MQ=255)
                 ggcgttatccccagtttGCAGAAACTCCGTAATga                   <  1:7668158‑M2/18‑1 (MQ=255)
                  gcgttatccccagtttGCAGAAACTCCGTAATgag                  >  1:5953843‑M2/17‑35 (MQ=255)
                  gcgttatccccagtttGCAGAAACTCCGTAATgag                  <  1:267322‑M2/19‑1 (MQ=255)
                  gcgttatccccagtttGCAGAAACTCCGTAATgag                  <  1:5815338‑M2/19‑1 (MQ=255)
                  gcgttatccccagtttGCAGAAACTCCGTAATgag                  >  1:234342‑M2/17‑35 (MQ=255)
                   cgttatccccagtttGCAGAAACTCCGTAATgaga                 >  1:5933424‑M2/16‑35 (MQ=255)
                    gttatccccagtttGCAGAAACTCCGTAATGAGAt                <  1:7609119‑M2/21‑1 (MQ=255)
                    gttatccccagtttGCAGAAACTCCGTAATGAGAt                <  1:6226027‑M2/21‑1 (MQ=255)
                     ttatccccagtttGCAGAAACTCCGTAATGAGAtt               >  1:60044‑M2/14‑35 (MQ=255)
                     ttatccccagtttGCAGAAACTCCGTAATGAGAtt               <  1:2614183‑M2/22‑1 (MQ=255)
                     ttatccccagtttGCAGAAACTCCGTAATGAGAtt               >  1:6185755‑M2/14‑35 (MQ=255)
                     ttatccccagtttGCAGAAACTCCGTAATGAGAtt               >  1:7677311‑M2/14‑35 (MQ=255)
                     ttatccccagtttGCAGAAACTCCGTAATGAGAtt               >  1:2365172‑M2/14‑35 (MQ=255)
                      tatccccagtttGCAGAAACTCCGTAATGAGATTa              <  1:2155683‑M2/23‑1 (MQ=255)
                      tatccccagtttGCAGAAACTCCGTAATGAGATTa              <  1:6093226‑M2/23‑1 (MQ=255)
                      tatccccagtttGCAGAAACTCCGTAATGAGATTa              <  1:1607213‑M2/23‑1 (MQ=255)
                      tatccccagtttGCAGAAACTCCGTAATGAGATTa              <  1:3414668‑M2/23‑1 (MQ=255)
                      tatccccagtttGCAGAAACTCCGTAATGAGATTa              <  1:4869051‑M2/23‑1 (MQ=255)
                       atccccagtttGCAGAAACTCCGTAATGAGATTaa             <  1:618583‑M2/24‑1 (MQ=255)
                       atccccagtttGCAGAAACTCCGTAATGAGATTaa             <  1:7541986‑M2/24‑1 (MQ=255)
                       atccccagtttGCAGAAACTCCGTAATGAGATTaa             >  1:4617501‑M2/12‑35 (MQ=255)
                        tccccagtttGCAGAAACTCCGTAATGAGATTaaa            >  1:7406791‑M2/11‑35 (MQ=255)
                        tccccagtttGCAGAAACTCCGTAATGAGATTaaa            >  1:7325539‑M2/11‑35 (MQ=255)
                        tccccagtttGCAGAAACTCCGTAATGAGATTaaa            >  1:1661532‑M2/11‑35 (MQ=255)
                        tccccagtttGCAGAAACTCCGTAATGAGATTaaa            >  1:5460978‑M2/11‑35 (MQ=255)
                        tccccagtttGCAGAAACTCCGTAATGAGATTaaa            <  1:5455347‑M2/25‑1 (MQ=255)
                        tccccagtttGCAGAAACTCCGTAATGAGATTaaa            <  1:7543274‑M2/25‑1 (MQ=255)
                         ccccagtttGCAGAAACTCCGTAATGAGATTaaaa           >  1:4517716‑M2/10‑35 (MQ=255)
                          cccagtttGCAGAAACTCCGTAATGAGATTAAAAg          >  1:530027‑M2/9‑35 (MQ=255)
                          cccagtttGCAGAAACTCCGTAATGAGATTAAAAg          >  1:5963048‑M2/9‑35 (MQ=255)
                          cccagtttGCAGAAACTCCGTAATGAGATTAAAAg          <  1:2163212‑M2/27‑1 (MQ=255)
                            cagtttGCAGAAACTCCGTAATGAGATTAAAAgcg        <  1:2431198‑M2/29‑1 (MQ=255)
                             agtttGCAGAAACTCCGTAATGAGATTAAAAgcgc       >  1:1936460‑M2/6‑35 (MQ=255)
                             agtttGCAGAAACTCCGTAATGAGATTAAAAgcgc       <  1:6905958‑M2/30‑1 (MQ=255)
                              gtttGCAGAAACTCCGTAATGAGATTAAAAGCGCt      <  1:5312114‑M2/31‑1 (MQ=255)
                              gtttGCAGAAACTCCGTAATGAGATTAAAAGCGCt      <  1:7431665‑M2/31‑1 (MQ=255)
                              gtttGCAGAAACTCCGTAATGAGATTAAAAGCGCt      >  1:3941312‑M2/5‑35 (MQ=255)
                               tttGCAGAAACTCCGTAATGAGATTAAAAGCGCTc     <  1:4988057‑M2/32‑1 (MQ=255)
                               tttGCAGAAACTCCGTAATGAGATTAAAAGCGCTc     >  1:1566432‑M2/4‑35 (MQ=255)
                                ttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCa    <  1:1613772‑M2/33‑1 (MQ=255)
                                ttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCa    <  1:1151648‑M2/33‑1 (MQ=255)
                                ttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCa    <  1:5401928‑M2/33‑1 (MQ=255)
                                 tGCAGAAACTCCGTAATGAGATTAAAAGCGCTCAt   >  1:1096624‑M2/2‑35 (MQ=255)
                                 tGCAGAAACTCCGTAATGAGATTAAAAGCGCTCAt   <  1:6936903‑M2/34‑1 (MQ=255)
                                 tGCAGAAACTCCGTAATGAGATTAAAAGCGCTCAt   >  1:2210744‑M2/2‑35 (MQ=255)
                                 tGCAGAAACTCCGTAATGAGATTAAAAGCGCTCAt   >  1:2477725‑M2/2‑35 (MQ=255)
                                 tGCAGAAACTCCGTAATGAGATTAAAAGCGCTCAt   <  1:2750247‑M2/34‑1 (MQ=255)
                                 tGCAGAAACTCCGTAATGAGATTAAAAGCGCTCAt   <  1:309469‑M2/34‑1 (MQ=255)
                                 tGCAGAAACTCCGTAATGAGATTAAAAGCGCTCAt   <  1:4627551‑M2/34‑1 (MQ=255)
                                 tGCAGAAACTCCGTAATGAGATTAAAAGCGCTCAt   <  1:429479‑M2/34‑1 (MQ=255)
                                  gcaGAAACTCCGTAATGAGATTAAAAGCGCTCATa  >  1:5423637/1‑35 (MQ=255)
                                  gcaGAAACTCCGTAATGAGATTAAAAGCGCTCATa  <  1:5000353/35‑1 (MQ=255)
                                  gcaGAAACTCCGTAATGAGATTAAAAGCGCTCATa  <  1:4068290/35‑1 (MQ=255)
                                  |                                  
TTTCAAACGGGCTTAATGACTTATCGGCACGCACGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATA  >  NC_000913/2080558‑2080626

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.