| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,204,350 | Δ32,368 bp | yehL–preA | 30 genes yehL, yehM, yehP, yehQ, yehR, yehS, btsR, btsS, mlrA, yohO, yehW, yehX, yehY, osmF, bglX, dld, pbpG, yohC, yohD, yohF, mdtQ, yohP, dusC, yohJ, yohK, cdd, sanA, yeiS, preT, preA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2204350 | 2236717 | 32368 | 72 [0] | [0] 73 | yehL–preA | yehL,yehM,yehP,yehQ,yehR,yehS,btsR,btsS,mlrA,yohO,yehW,yehX,yehY,osmF,bglX,dld,pbpG,yohC,yohD,yohF,mdtQ,yohP,dusC,yohJ,yohK,cdd,sanA,yeiS,preT,preA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2204349 | 0 (0.000) | 70 (0.970) | 40/68 | 0.0 | 100% | intergenic (+60/‑247) | yehK/yehL | uncharacterized protein YehK/putative AAA(+) MoxR family ATPase YehL |
| ? | NC_000913 | 2236718 = | 0 (0.000) | intergenic (+218/+25) | preA/mglC | NAD‑dependent dihydropyrimidine dehydrogenase subunit PreA/D‑galactose/methyl‑galactoside ABC transporter membrane subunit | |||||
AAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTA > NC_000913/2236684‑2236752 | cgatccggcgcaacgtcccaatggcctggattatt > 1:3489481‑M2/35‑35 (MQ=255)cgatccggcgcaacgtcccaatggcctggattatt > 1:3546483‑M2/35‑35 (MQ=255)cgatccggcgcaacgtcccaatggcctggattatt < 1:2551858‑M2/1‑1 (MQ=255)cgatccggcgcaacgtcccaatggcctggattatt < 1:2292678‑M2/1‑1 (MQ=255)cgatccggcgcaacgtcccaatggcctggattatt > 1:5764781‑M2/35‑35 (MQ=255) atccggcgcaacgtcccaatggcctggattatTGa > 1:3679364‑M2/33‑35 (MQ=255) atccggcgcaacgtcccaatggcctggattatTGa < 1:4243458‑M2/3‑1 (MQ=255) atccggcgcaacgtcccaatggcctggattatTGa > 1:241348‑M2/33‑35 (MQ=255) atccggcgcaacgtcccaatggcctggattatTGa < 1:6333650‑M2/3‑1 (MQ=255) tccggcgcaacgtcccaatggcctggattatTGAc < 1:7737059‑M2/4‑1 (MQ=255) ccggcgcaacgtcccaatggcctggattatTGAcc < 1:5496712‑M2/5‑1 (MQ=255) ccggcgcaacgtcccaatggcctggattatTGAcc < 1:2374797‑M2/5‑1 (MQ=255) cggcgcaacgtcccaatggcctggattatTGACCg < 1:1946583‑M2/6‑1 (MQ=255) cggcgcaacgtcccaatggcctggattatTGACCg < 1:1946547‑M2/6‑1 (MQ=255) cggcgcaacgtcccaatggcctggattatTGACCg < 1:7532087‑M2/6‑1 (MQ=255) gcgcaacgtcccaatggcctggattatTGACCGaa < 1:5566840‑M2/8‑1 (MQ=255) gcgcaacgtcccaatggcctggattatTGACCGaa < 1:6575030‑M2/8‑1 (MQ=255) gcgcaacgtcccaatggcctggattatTGACCGaa < 1:2437463‑M2/8‑1 (MQ=255) gcaacgtcccaatggcctggattatTGACCGAATg < 1:5012894‑M2/10‑1 (MQ=255) caacgtcccaatggcctggattatTGACCGAATGc > 1:215869‑M2/25‑35 (MQ=255) caacgtcccaatggcctggattatTGACCGAATGc > 1:1476639‑M2/25‑35 (MQ=255) aacgtcccaatggcctggattatTGACCGAATGCg < 1:6298964‑M2/12‑1 (MQ=255) aacgtcccaatggcctggattatTGACCGAATGCg < 1:727185‑M2/12‑1 (MQ=255) acgtcccaatggcctggattatTGACCGAATGCgg > 1:1175632‑M2/23‑35 (MQ=255) acgtcccaatggcctggattatTGACCGAATGCgg > 1:1216167‑M2/23‑35 (MQ=255) acgtcccaatggcctggattatTGACCGAATGCgg > 1:522822‑M2/23‑35 (MQ=255) cgtcccaatggcctggattatTGACCGAATGCGGa < 1:6206806‑M2/14‑1 (MQ=255) gtcccaatggcctggattatTGACCGAATGCGGAc < 1:1466744‑M2/15‑1 (MQ=255) gtcccaatggcctggattatTGACCGAATGCGGAc < 1:5258380‑M2/15‑1 (MQ=255) gtcccaatggcctggattatTGACCGAATGCGGAc < 1:3458103‑M2/15‑1 (MQ=255) tcccaatggcctggattatTGACCGAATGCGGAcc > 1:4462214‑M2/20‑35 (MQ=255) tcccaatggcctggattatTGACCGAATGCGGAcc < 1:4184370‑M2/16‑1 (MQ=255) tcccaatggcctggattatTGACCGAATGCGGAcc > 1:1607386‑M2/20‑35 (MQ=255) cccaatggcctggattatTGACCGAATGCGGACca < 1:1208184‑M2/17‑1 (MQ=255) ccaatggcctggattatTGACCGAATGCGGACcac < 1:7775110‑M2/18‑1 (MQ=255) ccaatggcctggattatTGACCGAATGCGGACcac > 1:3955295‑M2/18‑35 (MQ=255) ccaatggcctggattatTGACCGAATGCGGACcac > 1:120530‑M2/18‑35 (MQ=255) aatggcctggattatTGACCGAATGCGGACCACAt < 1:7001638‑M2/20‑1 (MQ=255) aatggcctggattatTGACCGAATGCGGACCACAt > 1:4733372‑M2/16‑35 (MQ=255) atggcctggattatTGACCGAATGCGGACCACAtt < 1:2043295‑M2/21‑1 (MQ=255) atggcctggattatTGACCGAATGCGGACCACAtt > 1:2092232‑M2/15‑35 (MQ=255) gcctggattatTGACCGAATGCGGACCACATTcac > 1:3454482‑M2/12‑35 (MQ=255) gcctggattatTGACCGAATGCGGACCACATTcac > 1:715481‑M2/12‑35 (MQ=255) cctggattatTGACCGAATGCGGACCACATTcaca < 1:3483210‑M2/25‑1 (MQ=255) ctggattatTGACCGAATGCGGACCACATTCAcat < 1:7311115‑M2/26‑1 (MQ=255) ctggattatTGACCGAATGCGGACCACATTCAcat > 1:2829230‑M2/10‑35 (MQ=255) ctggattatTGACCGAATGCGGACCACATTCAcat < 1:663027‑M2/26‑1 (MQ=255) tggattatTGACCGAATGCGGACCACATTCAcatc < 1:4639329‑M2/27‑1 (MQ=255) ggattatTGACCGAATGCGGACCACATTCAcatca < 1:2433008‑M2/28‑1 (MQ=255) ggattatTGACCGAATGCGGACCACATTCAcatca < 1:4384433‑M2/28‑1 (MQ=255) ggattatTGACCGAATGCGGACCACATTCAcatca < 1:3377978‑M2/28‑1 (MQ=255) gattatTGACCGAATGCGGACCACATTCAcatcat > 1:7536411‑M2/7‑35 (MQ=255) gattatTGACCGAATGCGGACCACATTCAcatcat > 1:7489831‑M2/7‑35 (MQ=255) gattatTGACCGAATGCGGACCACATTCAcatcat < 1:1763813‑M2/29‑1 (MQ=255) gattatTGACCGAATGCGGACCACATTCAcatcat > 1:5158895‑M2/7‑35 (MQ=255) attatTGACCGAATGCGGACCACATTCACATCAtt > 1:6169894‑M2/6‑35 (MQ=255) attatTGACCGAATGCGGACCACATTCACATCAtt < 1:6194978‑M2/30‑1 (MQ=255) ttatTGACCGAATGCGGACCACATTCACATCAttt > 1:6491374‑M2/5‑35 (MQ=255) ttatTGACCGAATGCGGACCACATTCACATCAttt < 1:3143767‑M2/31‑1 (MQ=255) ttatTGACCGAATGCGGACCACATTCACATCAttt > 1:1587490‑M2/5‑35 (MQ=255) tatTGACCGAATGCGGACCACATTCACATCATTTc > 1:5097825‑M2/4‑35 (MQ=255) atTGACCGAATGCGGACCACATTCACATCATTTCt > 1:638163‑M2/3‑35 (MQ=255) atTGACCGAATGCGGACCACATTCACATCATTTCt > 1:7263389‑M2/3‑35 (MQ=255) atTGACCGAATGCGGACCACATTCACATCATTTCt < 1:4278037‑M2/33‑1 (MQ=255) atTGACCGAATGCGGACCACATTCACATCATTTCt > 1:1000175‑M2/3‑35 (MQ=255) atTGACCGAATGCGGACCACATTCACATCATTTCt > 1:550444‑M2/3‑35 (MQ=255) atTGACCGAATGCGGACCACATTCACATCATTTCt < 1:2123665‑M2/33‑1 (MQ=255) tTGACCGAATGCGGACCACATTCACATCATTTCtt < 1:2430355‑M2/34‑1 (MQ=255) tTGACCGAATGCGGACCACATTCACATCATTTCtt > 1:4218287‑M2/2‑35 (MQ=255) tTGACCGAATGCGGACCACATTCACATCATTTCtt > 1:4030818‑M2/2‑35 (MQ=255) tGACCGAATGCGGACCACATTCACATCATTTCTTa < 1:1671113/35‑1 (MQ=255) tGACCGAATGCGGACCACATTCACATCATTTCTTa > 1:1794067/1‑35 (MQ=255) tGACCGAATGCGGACCACATTCACATCATTTCTTa < 1:5996622/35‑1 (MQ=255) | AAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTA > NC_000913/2236684‑2236752 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |