Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 167,484 Δ5,964 bp [fhuA]–fhuB [fhuA], fhuC, fhuD, fhuB

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 167484 173447 5964 119 [0] [0] 113 [fhuA]–fhuB [fhuA],fhuC,fhuD,fhuB

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1674830 (0.000)113 (1.560) 49/68 0.0 100% intergenic (+219/‑1) mrcB/fhuA peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB/ferrichrome outer membrane transporter/phage receptor
?NC_000913 173448 = 0 (0.000)intergenic (+4/+154) fhuB/hemL iron(III) hydroxamate ABC transporter membrane subunit/glutamate‑1‑semialdehyde aminotransferase

Only 100 of 119 total aligned reads displayed.

TACGTTATCATTCACTTTACATCAGAGATATACCAATGGCGCGTTCCAAAACTGCTCAGCCAAAACACT  >  NC_000913/167449‑167517
                                  |                                  
tACGTTATCATTCACTTTACATCAGAGATATACCa                                    >  1:3052036/1‑35 (MQ=255)
tACGTTATCATTCACTTTACATCAGAGATATACCa                                    >  1:2422680/1‑35 (MQ=255)
tACGTTATCATTCACTTTACATCAGAGATATACCa                                    <  1:4786896/35‑1 (MQ=255)
tACGTTATCATTCACTTTACATCAGAGATATACCa                                    <  1:1385459/35‑1 (MQ=255)
tACGTTATCATTCACTTTACATCAGAGATATACCa                                    <  1:7592919/35‑1 (MQ=255)
 aCGTTATCATTCACTTTACATCAGAGATATACCAt                                   <  1:4408766‑M1/35‑2 (MQ=255)
 aCGTTATCATTCACTTTACATCAGAGATATACCAt                                   <  1:1126157‑M1/35‑2 (MQ=255)
 aCGTTATCATTCACTTTACATCAGAGATATACCAt                                   <  1:7502454‑M1/35‑2 (MQ=255)
 aCGTTATCATTCACTTTACATCAGAGATATACCAt                                   >  1:7196906‑M1/1‑34 (MQ=255)
 aCGTTATCATTCACTTTACATCAGAGATATACCAt                                   >  1:6204395‑M1/1‑34 (MQ=255)
  cGTTATCATTCACTTTACATCAGAGATATACCAtt                                  >  1:7799616‑M1/1‑33 (MQ=255)
  cGTTATCATTCACTTTACATCAGAGATATACCAtt                                  <  1:6559170‑M1/35‑3 (MQ=255)
  cGTTATCATTCACTTTACATCAGAGATATACCAtt                                  >  1:6155212‑M1/1‑33 (MQ=255)
  cGTTATCATTCACTTTACATCAGAGATATACCAtt                                  >  1:5904786‑M1/1‑33 (MQ=255)
  cGTTATCATTCACTTTACATCAGAGATATACCAtt                                  <  1:5439845‑M1/35‑3 (MQ=255)
    ttATCATTCACTTTACATCAGAGATATACCAttcc                                >  1:4604850‑M1/1‑31 (MQ=255)
    ttATCATTCACTTTACATCAGAGATATACCAttcc                                <  1:6651566‑M1/35‑5 (MQ=255)
    ttATCATTCACTTTACATCAGAGATATACCAttcc                                >  1:1874766‑M1/1‑31 (MQ=255)
    ttATCATTCACTTTACATCAGAGATATACCAttcc                                >  1:6030340‑M1/1‑31 (MQ=255)
     tATCATTCACTTTACATCAGAGATATACCAttcca                               <  1:4908367‑M1/35‑6 (MQ=255)
     tATCATTCACTTTACATCAGAGATATACCAttcca                               <  1:3612274‑M1/35‑6 (MQ=255)
     tATCATTCACTTTACATCAGAGATATACCAttcca                               >  1:4986643‑M1/1‑30 (MQ=255)
     tATCATTCACTTTACATCAGAGATATACCAttcca                               >  1:1990579‑M1/1‑30 (MQ=255)
     tATCATTCACTTTACATCAGAGATATACCAttcca                               <  1:7738834‑M1/35‑6 (MQ=255)
      aTCATTCACTTTACATCAGAGATATACCAttccat                              >  1:2509374‑M1/1‑29 (MQ=255)
      aTCATTCACTTTACATCAGAGATATACCAttccat                              <  1:7283094‑M1/35‑7 (MQ=255)
      aTCATTCACTTTACATCAGAGATATACCAttccat                              >  1:7330711‑M1/1‑29 (MQ=255)
      aTCATTCACTTTACATCAGAGATATACCAttccat                              >  1:27470‑M1/1‑29 (MQ=255)
      aTCATTCACTTTACATCAGAGATATACCAttccat                              >  1:4135605‑M1/1‑29 (MQ=255)
      aTCATTCACTTTACATCAGAGATATACCAttccat                              <  1:2898896‑M1/35‑7 (MQ=255)
      aTCATTCACTTTACATCAGAGATATACCAttccat                              >  1:1092344‑M1/1‑29 (MQ=255)
       tCATTCACTTTACATCAGAGATATACCAttccata                             >  1:499122‑M1/1‑28 (MQ=255)
       tCATTCACTTTACATCAGAGATATACCAttccata                             <  1:464213‑M1/35‑8 (MQ=255)
       tCATTCACTTTACATCAGAGATATACCAttccata                             <  1:4007746‑M1/35‑8 (MQ=255)
       tCATTCACTTTACATCAGAGATATACCAttccata                             <  1:909975‑M1/35‑8 (MQ=255)
       tCATTCACTTTACATCAGAGATATACCAttccata                             <  1:1929549‑M1/35‑8 (MQ=255)
       tCATTCACTTTACATCAGAGATATACCAttccata                             >  1:226482‑M1/1‑28 (MQ=255)
        cATTCACTTTACATCAGAGATATACCAttccatat                            <  1:7523978‑M1/35‑9 (MQ=255)
        cATTCACTTTACATCAGAGATATACCAttccatat                            <  1:15408‑M1/35‑9 (MQ=255)
        cATTCACTTTACATCAGAGATATACCAttccatat                            <  1:360509‑M1/35‑9 (MQ=255)
        cATTCACTTTACATCAGAGATATACCAttccatat                            <  1:7702275‑M1/35‑9 (MQ=255)
        cATTCACTTTACATCAGAGATATACCAttccatat                            <  1:2879095‑M1/35‑9 (MQ=255)
         aTTCACTTTACATCAGAGATATACCAttccatata                           <  1:3485457‑M1/35‑10 (MQ=255)
         aTTCACTTTACATCAGAGATATACCAttccatata                           >  1:485998‑M1/1‑26 (MQ=255)
         aTTCACTTTACATCAGAGATATACCAttccatata                           >  1:6807380‑M1/1‑26 (MQ=255)
          ttCACTTTACATCAGAGATATACCAttccatataa                          >  1:4199776‑M1/1‑25 (MQ=255)
           tCACTTTACATCAGAGATATACCAttccatataac                         <  1:3836532‑M1/35‑12 (MQ=255)
            cACTTTACATCAGAGATATACCAttccatataacg                        >  1:6088159‑M1/1‑23 (MQ=255)
            cACTTTACATCAGAGATATACCAttccatataacg                        >  1:5238148‑M1/1‑23 (MQ=255)
             aCTTTACATCAGAGATATACCAttccatataacgg                       >  1:6412912‑M1/1‑22 (MQ=255)
             aCTTTACATCAGAGATATACCAttccatataacgg                       <  1:3786678‑M1/35‑14 (MQ=255)
                ttACATCAGAGATATACCAttccatataacggccc                    <  1:4275685‑M1/35‑17 (MQ=255)
                ttACATCAGAGATATACCAttccatataacggccc                    >  1:1809240‑M1/1‑19 (MQ=255)
                ttACATCAGAGATATACCAttccatataacggccc                    <  1:209834‑M1/35‑17 (MQ=255)
                 tACATCAGAGATATACCAttccatataacggccct                   >  1:7058580‑M1/1‑18 (MQ=255)
                 tACATCAGAGATATACCAttccatataacggccct                   >  1:215312‑M1/1‑18 (MQ=255)
                 tACATCAGAGATATACCAttccatataacggccct                   >  1:3222768‑M1/1‑18 (MQ=255)
                 tACATCAGAGATATACCAttccatataacggccct                   >  1:1052789‑M1/1‑18 (MQ=255)
                 tACATCAGAGATATACCAttccatataacggccct                   >  1:7889405‑M1/1‑18 (MQ=255)
                 tACATCAGAGATATACCAttccatataacggccct                   >  1:2859072‑M1/1‑18 (MQ=255)
                  aCATCAGAGATATACCAttccatataacggccctg                  <  1:2524571‑M1/35‑19 (MQ=255)
                  aCATCAGAGATATACCAttccatataacggccctg                  <  1:1845089‑M1/35‑19 (MQ=255)
                  aCATCAGAGATATACCAttccatataacggccctg                  >  1:83988‑M1/1‑17 (MQ=255)
                  aCATCAGAGATATACCAttccatataacggccctg                  <  1:1122138‑M1/35‑19 (MQ=255)
                  aCATCAGAGATATACCAttccatataacggccctg                  <  1:7387962‑M1/35‑19 (MQ=255)
                  aCATCAGAGATATACCAttccatataacggccctg                  <  1:4479202‑M1/35‑19 (MQ=255)
                  aCATCAGAGATATACCAttccatataacggccctg                  >  1:1218031‑M1/1‑17 (MQ=255)
                   cATCAGAGATATACCAttccatataacggccctgt                 >  1:1566799‑M1/1‑16 (MQ=255)
                    aTCAGAGATATACCAttccatataacggccctgta                <  1:421526‑M1/35‑21 (MQ=255)
                    aTCAGAGATATACCAttccatataacggccctgta                <  1:5692149‑M1/35‑21 (MQ=255)
                    aTCAGAGATATACCAttccatataacggccctgta                <  1:2216137‑M1/35‑21 (MQ=255)
                    aTCAGAGATATACCAttccatataacggccctgta                >  1:3076292‑M1/1‑15 (MQ=255)
                    aTCAGAGATATACCAttccatataacggccctgta                <  1:4706445‑M1/35‑21 (MQ=255)
                     tCAGAGATATACCAttccatataacggccctgtac               >  1:4059216‑M1/1‑14 (MQ=255)
                     tCAGAGATATACCAttccatataacggccctgtac               >  1:6333388‑M1/1‑14 (MQ=255)
                       agagATATACCAttccatataacggccctgtacgc             >  1:7707715‑M1/1‑12 (MQ=255)
                       agagATATACCAttccatataacggccctgtacgc             >  1:6802939‑M1/1‑12 (MQ=255)
                        gagaTATACCAttccatataacggccctgtacgcc            >  1:3240651‑M1/1‑11 (MQ=255)
                        gagaTATACCAttccatataacggccctgtacgcc            <  1:6202482‑M1/35‑25 (MQ=255)
                         agaTATACCAttccatataacggccctgtacgcct           >  1:2571893‑M1/1‑10 (MQ=255)
                          gaTATACCAttccatataacggccctgtacgcctg          <  1:5579901‑M1/35‑27 (MQ=255)
                          gaTATACCAttccatataacggccctgtacgcctg          <  1:1212384‑M1/35‑27 (MQ=255)
                           atatACCAttccatataacggccctgtacgcctgg         <  1:2746617‑M1/35‑28 (MQ=255)
                           atatACCAttccatataacggccctgtacgcctgg         >  1:4855304‑M1/1‑8 (MQ=255)
                            tataCCAttccatataacggccctgtacgcctgga        >  1:3570468‑M1/1‑7 (MQ=255)
                            tataCCAttccatataacggccctgtacgcctgga        <  1:674335‑M1/35‑29 (MQ=255)
                            tataCCAttccatataacggccctgtacgcctgga        >  1:6030497‑M1/1‑7 (MQ=255)
                            tataCCAttccatataacggccctgtacgcctgga        <  1:5540371‑M1/35‑29 (MQ=255)
                            tataCCAttccatataacggccctgtacgcctgga        >  1:2277522‑M1/1‑7 (MQ=255)
                            tataCCAttccatataacggccctgtacgcctgga        <  1:1654682‑M1/35‑29 (MQ=255)
                            tataCCAttccatataacggccctgtacgcctgga        >  1:6358313‑M1/1‑7 (MQ=255)
                             ataCCAttccatataacggccctgtacgcctggac       >  1:2508145‑M1/1‑6 (MQ=255)
                             ataCCAttccatataacggccctgtacgcctggac       >  1:1988971‑M1/1‑6 (MQ=255)
                              taCCAttccatataacggccctgtacgcctggacg      <  1:2337353‑M1/35‑31 (MQ=255)
                              taCCAttccatataacggccctgtacgcctggacg      >  1:3607747‑M1/1‑5 (MQ=255)
                               aCCAttccatataacggccctgtacgcctggacgg     <  1:2980793‑M1/35‑32 (MQ=255)
                                ccAttccatataacggccctgtacgcctggacgga    <  1:4713891‑M1/35‑33 (MQ=255)
                                ccAttccatataacggccctgtacgcctggacgga    >  1:3854803‑M1/1‑3 (MQ=255)
                                  attccatataacggccctgtacgcctggacggata  <  1:7316937‑M1/35‑35 (MQ=255)
                                  attccatataacggccctgtacgcctggacggata  >  1:3575528‑M1/1‑1 (MQ=255)
                                  |                                  
TACGTTATCATTCACTTTACATCAGAGATATACCAATGGCGCGTTCCAAAACTGCTCAGCCAAAACACT  >  NC_000913/167449‑167517

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑