Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1400303 1482259 81957 17 [15] [15] 18 [abgT]–[azoR] [abgT],abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,ttcA,intR,xisR,rcbA,ralA,ralR,recT,recE,racC,ydaE,kilR,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzpR,rzoR,trkG,ynaK,ydaY,ynaA,lomR,insH‑5,lomR,stfR,tfaR,pinR,ynaE,ynaM,ttcC,uspF,ompN,micC,ydbK,ydbJ,hslJ,ldhA,ydbH,ynbE,ydbL,feaR,feaB,tynA,paaZ,paaA,paaB,paaC,paaD,paaE,paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD‑2,insC‑2,ydbA,insI‑2,ydbA,pdxI,ydbD,ynbA,ynbB,ynbC,ynbD,[azoR]

ACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAA  >  NC_000913/1400268‑1400309
                                  |       
aCCCGGACCTATCGGCAGACCGACAAGATACCACg         <  1:2671721/35‑1 (MQ=255)
aCCCGGACCTATCGGCAGACCGACAAGATACCACg         >  1:398535/1‑35 (MQ=255)
 cccGGACCTATCGGCAGACCGACAAGATACCACGc        >  1:1339100/1‑35 (MQ=255)
 cccGGACCTATCGGCAGACCGACAAGATACCACGc        >  1:1609655/1‑35 (MQ=255)
 cccGGACCTATCGGCAGACCGACAAGATACCACGc        <  1:6860926/35‑1 (MQ=255)
 cccGGACCTATCGGCAGACCGACAAGATACCACGc        >  1:4080428/1‑35 (MQ=255)
  ccGGACCTATCGGCAGACCGACAAGATACCACGcc       <  1:3984138/35‑1 (MQ=255)
    ggACCTATCGGCAGACCGACAAGATACCACGCCAg     >  1:1598808/1‑35 (MQ=255)
    ggACCTATCGGCAGACCGACAAGATACCACGCCAg     <  1:5414691/35‑1 (MQ=255)
     gACCTATCGGCAGACCGACAAGATACCACGCCAGc    <  1:1588316/35‑1 (MQ=255)
     gACCTATCGGCAGACCGACAAGATACCACGCCAGc    >  1:4931624/1‑35 (MQ=255)
     gACCTATCGGCAGACCGACAAGATACCACGCCAGc    <  1:4170264/35‑1 (MQ=255)
      aCCTATCGGCAGACCGACAAGATACCACGCCAGCa   <  1:3964477/35‑1 (MQ=255)
      aCCTATCGGCAGACCGACAAGATACCACGCCAGCa   <  1:2963312/35‑1 (MQ=255)
       ccTATCGGCAGACCGACAAGATACCACGCCAGCac  >  1:6359426/1‑34 (MQ=255)
       ccTATCGGCAGACCGACAAGATACCACGCCAGCac  <  1:2509614/35‑2 (MQ=255)
       ccTATCGGCAGACCGACAAGATACCACGCCAGCac  >  1:7631431/1‑34 (MQ=255)
                                  |       
ACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAA  >  NC_000913/1400268‑1400309

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: