| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 66 [0] | [0] 65 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 65 (0.800) | 39/96 | 0.2 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15339‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20564‑20610 TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTC > 1:3014303/1‑50 AGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCT > 1:4026343/1‑50 GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTA < 1:1604615/50‑1 GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCT < 1:4736483/49‑1 GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCT < 1:1706497/49‑1 GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCT < 1:1547633/49‑1 GTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCCATCTACC > 1:3144092/1‑50 TGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCT < 1:1577342/50‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCA < 1:2683323/50‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTC < 1:5057675/49‑1 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAAT < 1:5423329/50‑1 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAAT < 1:750319/50‑1 GAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATG < 1:1482622/49‑1 GAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATG < 1:140447/49‑1 AAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCCCAATGTG > 1:1033101/1‑50 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGT < 1:2874831/49‑1 AGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGT < 1:5782164/50‑1 AGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGT < 1:769481/50‑1 ATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCACCTCAATGTGTAT > 1:15130/1‑50 ATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCACCCCAATGTGTAT > 1:6237554/1‑50 ATATGCGAGCACCTGTAAAGTGGCGGGGGTCACCCTACCTCAATTTGTA > 1:648951/1‑49 ATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTAT < 1:5460272/50‑1 ATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTAT < 1:3252139/50‑1 ATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCACCTCCATTTGTATta > 1:6096996/1‑48 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCAC < 1:4699724/50‑1 CGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAA < 1:5871566/50‑1 AGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATA < 1:567636/50‑1 AGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATA < 1:5294300/50‑1 GCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATAT < 1:5744586/50‑1 CACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATC < 1:1611951/50‑1 CCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCA < 1:3316283/50‑1 CCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCA < 1:5171374/50‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATT < 1:3857415/50‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATA < 1:3442023/48‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCT < 1:3701119/50‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCT < 1:3119886/50‑1 GTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTT < 1:582004/50‑1 TGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTG < 1:54597/50‑1 TGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTG > 1:3909393/1‑50 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTG < 1:2052661/50‑1 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTG < 1:5115108/50‑1 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT < 1:3703107/49‑1 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT < 1:4485380/49‑1 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:4249238/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:417246/1‑50 GGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:546329/1‑50 GGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:596003/1‑49 GGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:1335083/1‑49 GATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGA < 1:49212/50‑1 GATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGA < 1:4902764/50‑1 GATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGA < 1:5277081/50‑1 ATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAG > 1:5463933/1‑50 ATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAG > 1:2126813/1‑50 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT > 1:4703782/1‑50 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT < 1:2131046/50‑1 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT > 1:1655083/1‑50 CACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC > 1:1745730/1‑50 CACTCTACCTCAATGAGTATCACAATATCCATATTCTTTGTGGGGGAGTC > 1:855402/1‑50 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC < 1:4921605/49‑1 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC < 1:1340366/49‑1 CTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG < 1:4046351/50‑1 CTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:3452974/1‑50 CTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG < 1:2199418/50‑1 TCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:407980/1‑49 TCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:2091577/1‑49 TCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:1432281/1‑49 TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15339‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20564‑20610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |