| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 66 [0] | [0] 65 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 65 (0.800) | 39/96 | 0.2 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20515‑20610 | agggtgcgttgaagatatgcgagcacctgtaaagtggcgggggtcactct > 1:4026343‑M2/50‑50 (MQ=255) gggtgcgttgaagatatgcgagcacctgtaaagtggcggggatcactct < 1:4736483‑M2/1‑1 (MQ=255) gggtgcgttgaagatatgcgagcacctgtaaagtggcggggatcactct < 1:1706497‑M2/1‑1 (MQ=255) gggtgcgttgaagatatgcgagcacctgtaaagtggcggggatcactct < 1:1547633‑M2/1‑1 (MQ=255) gggtgcgttgaagatatgcgagcacctgtaaagtggcggggatcactcTa < 1:1604615‑M2/2‑1 (MQ=255) gtgcgttgaagatatgcgagcacctgtaaagtggcgggggtccatcTAcc > 1:3144092‑M2/47‑50 (MQ=255) tgcgttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCt < 1:1577342‑M2/5‑1 (MQ=255) cgttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTc < 1:5057675‑M2/6‑1 (MQ=255) cgttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCa < 1:2683323‑M2/7‑1 (MQ=255) ttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAt < 1:750319‑M2/9‑1 (MQ=255) ttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAt < 1:5423329‑M2/9‑1 (MQ=255) gaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAtg < 1:1482622‑M2/10‑1 (MQ=255) gaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAtg < 1:140447‑M2/10‑1 (MQ=255) aagatatgcgagcacctgtaaagtggcgggggtcactcTACCCCAAtgtg > 1:1033101‑M2/39‑50 (MQ=255) aagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAtgt < 1:2874831‑M2/11‑1 (MQ=255) agatatgcgagcacctgtaaagtggcggggatcactcTACCTCAATgtgt < 1:5782164‑M2/13‑1 (MQ=255) agatatgcgagcacctgtaaagtggcggggatcactcTACCTCAATgtgt < 1:769481‑M2/13‑1 (MQ=255) atatgcgagcacctgtaaagtggcgggggtcactcCACCTCAATGTGTAt > 1:15130‑M2/36‑50 (MQ=255) atatgcgagcacctgtaaagtggcgggggtcactcCACCCCAATGTGTAt > 1:6237554‑M2/36‑50 (MQ=255) atatgcgagcacctgtaaagtggcgggggtcacccTACCTCAATTTGTa > 1:648951‑M2/36‑49 (MQ=255) atatgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTAt < 1:5460272‑M2/15‑1 (MQ=255) atatgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTAt < 1:3252139‑M2/15‑1 (MQ=255) atgcgagcacctgtaaagtggcgggggtcactcCACCTCCATTTGtatta > 1:6096996‑M2/34‑48 (MQ=255) tgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATcac < 1:4699724‑M2/18‑1 (MQ=255) cgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACaa < 1:5871566‑M2/20‑1 (MQ=255) agcacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAata < 1:567636‑M2/22‑1 (MQ=255) agcacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAata < 1:5294300‑M2/22‑1 (MQ=255) gcacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAatat < 1:5744586‑M2/23‑1 (MQ=255) cacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAATATc < 1:1611951‑M2/24‑1 (MQ=255) cctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCa < 1:3316283‑M2/26‑1 (MQ=255) cctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCa < 1:5171374‑M2/26‑1 (MQ=255) taaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCata < 1:3442023‑M2/28‑1 (MQ=255) taaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCATAtt < 1:3857415‑M2/30‑1 (MQ=255) aagtggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCt < 1:3701119‑M2/32‑1 (MQ=255) aagtggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCt < 1:3119886‑M2/32‑1 (MQ=255) gtggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCttt < 1:582004‑M2/34‑1 (MQ=255) tggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtg < 1:54597‑M2/35‑1 (MQ=255) tggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtg > 1:3909393‑M2/16‑50 (MQ=255) gcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtgtg < 1:2052661‑M2/37‑1 (MQ=255) gcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtgtg < 1:5115108‑M2/37‑1 (MQ=255) gcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtgt < 1:3703107‑M2/36‑1 (MQ=255) gcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtgt < 1:4485380‑M2/36‑1 (MQ=255) ggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTggg > 1:4249238‑M2/12‑50 (MQ=255) ggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTggg > 1:417246‑M2/12‑50 (MQ=255) gggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgggg > 1:546329‑M2/11‑50 (MQ=255) ggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgggg > 1:596003‑M2/10‑49 (MQ=255) ggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgggg > 1:1335083‑M2/10‑49 (MQ=255) gatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGa < 1:49212‑M2/42‑1 (MQ=255) gatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGa < 1:4902764‑M2/42‑1 (MQ=255) gatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGa < 1:5277081‑M2/42‑1 (MQ=255) atcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAg > 1:5463933‑M2/8‑50 (MQ=255) atcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAg > 1:2126813‑M2/8‑50 (MQ=255) tcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGt > 1:4703782‑M2/7‑50 (MQ=255) tcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGt < 1:2131046‑M2/44‑1 (MQ=255) tcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGt > 1:1655083‑M2/7‑50 (MQ=255) cactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTc > 1:1745730‑M2/6‑50 (MQ=255) cactcTACCTCAATGAGTATCACAATATCCATATTCTTTGTGGGGGAGTc > 1:855402‑M2/6‑50 (MQ=255) actcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTc < 1:4921605‑M2/45‑1 (MQ=255) actcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTc < 1:1340366‑M2/45‑1 (MQ=255) ctcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg < 1:4046351‑M2/47‑1 (MQ=255) ctcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg > 1:3452974‑M2/4‑50 (MQ=255) ctcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg < 1:2199418‑M2/47‑1 (MQ=255) tcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg > 1:407980‑M2/3‑49 (MQ=255) tcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg > 1:2091577‑M2/3‑49 (MQ=255) tcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg > 1:1432281‑M2/3‑49 (MQ=255) | ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20515‑20610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |