| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 565,055 | Δ21,054 bp | [intD]–ompT | 37 genes [intD], xisD, exoD, renD, insE‑3, insF‑3, renD, emrE, ylcJ, ybcK, ybcL, ybcM, ylcH, ybcN, ninE, ybcO, rusA, ylcG, ybcQ, nmpC, insH‑2, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, tfaX, appY, ompT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 565055 | 586108 | 21054 | 71 [0] | [0] 73 | [intD]–ompT | [intD],xisD,exoD,renD,insE‑3,insF‑3,renD,emrE,ylcJ,ybcK,ybcL,ybcM,ylcH,ybcN,ninE,ybcO,rusA,ylcG,ybcQ,nmpC,insH‑2,nmpC,essD,rrrD,rzpD,rzoD,borD,ybcV,ybcW,ylcI,nohD,aaaD,tfaD,ybcY,tfaX,appY,ompT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 565054 | 0 (0.000) | 59 (0.790) | 47/88 | 0.0 | 100% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 0 (0.000) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
CTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/565001‑565054‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCA > NC_000913/586109‑586157 CTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAAT > 1:4535059/1‑50CTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAAT < 1:5155235/50‑1CTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAAT < 1:1495041/50‑1 GAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCT > 1:6141028/1‑50 AATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTT > 1:4759551/1‑50 AATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTT < 1:5558694/50‑1 AATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCT < 1:2454375/49‑1 AATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATC < 1:1375728/48‑1 ATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC < 1:118113/50‑1 ATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC < 1:3123570/50‑1 ATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC > 1:4351166/1‑50 AGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTC < 1:6062550/50‑1 AGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTC < 1:6068738/50‑1 AGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCT > 1:5918417/1‑49 GCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCA < 1:3246496/50‑1 CCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCAT > 1:5184487/1‑50 CCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCAT < 1:4458981/50‑1 CAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT > 1:1794420/1‑50 CAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT > 1:5462402/1‑50 CAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT > 1:850444/1‑50 CAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT > 1:3310286/1‑50 AGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTT < 1:6127562/50‑1 AGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT > 1:941945/1‑49 CTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTAT > 1:5136308/1‑50 CTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTAT < 1:4552035/50‑1 TGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGC > 1:6273655/1‑50 GCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGC < 1:1225781/49‑1 GCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATG < 1:570697/48‑1 CCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCC > 1:4524145/1‑50 CCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCC < 1:5495999/49‑1 CCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCG < 1:2866369/50‑1 CAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGT < 1:1277292/50‑1 AGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTC > 1:5636331/1‑50 AGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTC < 1:425151/50‑1 GGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCT > 1:6155442/1‑50 GTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTT < 1:3005328/50‑1 GTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTT < 1:6219069/50‑1 TGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTA > 1:3212036/1‑50 TGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTA < 1:6258563/50‑1 TGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATC > 1:2032761/1‑50 TGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATC > 1:4673503/1‑50 TGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTAT < 1:3115754/49‑1 TGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTAT < 1:1380398/49‑1 GTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCC > 1:2169637/1‑50 TCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCG < 1:5896057/50‑1 TCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCC < 1:4761663/49‑1 CTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGT > 1:4923920/1‑50 TGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTT > 1:4627166/1‑50 GAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTT > 1:5038598/1‑50 AGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTC > 1:4186002/1‑50 AGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTC < 1:2403498/50‑1 GTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCG < 1:4827660/50‑1 GTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCG < 1:388247/50‑1 GTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCG > 1:5061332/1‑50 GTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCG > 1:2557976/1‑50 TCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGC < 1:3932070/50‑1 CATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCT > 1:2613160/1‑50 TGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTT < 1:3619036/50‑1 GGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTG > 1:6163711/1‑50 GAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGC > 1:2798143/1‑50 GAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGC > 1:1396127/1‑50 AACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCC > 1:1392800/1‑50 CGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTT > 1:40148/1‑50 GGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTC < 1:227973/50‑1 GGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTT > 1:709820/1‑49 GGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTT > 1:2669454/1‑49 GGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTT > 1:2969127/1‑49 AAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCAC > 1:4494270/1‑50 AATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACC < 1:3626694/50‑1 AATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCAC > 1:4625534/1‑49 TCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCA > 1:6266441/1‑49 CTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACA > 1:1659847/1‑50 TTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAT > 1:4796870/1‑50 TCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAT > 1:4868648/1‑49 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCA > 1:3578985/1‑50 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAT < 1:3245967/48‑1 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACA < 1:1456020/47‑1 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACA < 1:1282286/47‑1 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCAC < 1:2686295/46‑1 CTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/565001‑565054‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCA > NC_000913/586109‑586157 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |