| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 565,055 | Δ21,054 bp | [intD]–ompT | 37 genes [intD], xisD, exoD, renD, insE‑3, insF‑3, renD, emrE, ylcJ, ybcK, ybcL, ybcM, ylcH, ybcN, ninE, ybcO, rusA, ylcG, ybcQ, nmpC, insH‑2, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, tfaX, appY, ompT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 565055 | 586108 | 21054 | 71 [0] | [0] 73 | [intD]–ompT | [intD],xisD,exoD,renD,insE‑3,insF‑3,renD,emrE,ylcJ,ybcK,ybcL,ybcM,ylcH,ybcN,ninE,ybcO,rusA,ylcG,ybcQ,nmpC,insH‑2,nmpC,essD,rrrD,rzpD,rzoD,borD,ybcV,ybcW,ylcI,nohD,aaaD,tfaD,ybcY,tfaX,appY,ompT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 565054 | 0 (0.000) | 59 (0.790) | 47/88 | 0.0 | 100% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 0 (0.000) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
AAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTTCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCAC > NC_000913/586062‑586158 | agccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCt > 1:5918417‑M2/48‑49 (MQ=255)agccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTc < 1:6068738‑M2/3‑1 (MQ=255)agccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTc < 1:6062550‑M2/3‑1 (MQ=255) gccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCa < 1:3246496‑M2/4‑1 (MQ=255) ccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAt < 1:4458981‑M2/5‑1 (MQ=255) ccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAt > 1:5184487‑M2/46‑50 (MQ=255) cagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt > 1:850444‑M2/45‑50 (MQ=255) cagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt > 1:1794420‑M2/45‑50 (MQ=255) cagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt > 1:3310286‑M2/45‑50 (MQ=255) cagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt > 1:5462402‑M2/45‑50 (MQ=255) agcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAttt < 1:6127562‑M2/7‑1 (MQ=255) agcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt > 1:941945‑M2/44‑49 (MQ=255) cttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTAt > 1:5136308‑M2/42‑50 (MQ=255) cttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTAt < 1:4552035‑M2/9‑1 (MQ=255) tgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGc > 1:6273655‑M2/40‑50 (MQ=255) gcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATg < 1:570697‑M2/10‑1 (MQ=255) gcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGc < 1:1225781‑M2/11‑1 (MQ=255) cccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGccc > 1:4524145‑M2/38‑50 (MQ=255) cccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGcc < 1:5495999‑M2/12‑1 (MQ=255) ccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCg < 1:2866369‑M2/14‑1 (MQ=255) caggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGt < 1:1277292‑M2/15‑1 (MQ=255) aggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTc > 1:5636331‑M2/35‑50 (MQ=255) aggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTc < 1:425151‑M2/16‑1 (MQ=255) ggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCt > 1:6155442‑M2/34‑50 (MQ=255) gtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCtt < 1:6219069‑M2/18‑1 (MQ=255) gtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCtt < 1:3005328‑M2/18‑1 (MQ=255) tgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTa > 1:3212036‑M2/32‑50 (MQ=255) tgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTa < 1:6258563‑M2/19‑1 (MQ=255) tgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTAt < 1:3115754‑M2/20‑1 (MQ=255) tgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTAt < 1:1380398‑M2/20‑1 (MQ=255) tgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATc > 1:2032761‑M2/30‑50 (MQ=255) tgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATc > 1:4673503‑M2/30‑50 (MQ=255) gtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATcc > 1:2169637‑M2/29‑50 (MQ=255) tctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATcc < 1:4761663‑M2/22‑1 (MQ=255) tctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCg < 1:5896057‑M2/23‑1 (MQ=255) ctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGt > 1:4923920‑M2/27‑50 (MQ=255) tgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGtt > 1:4627166‑M2/26‑50 (MQ=255) gaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGttt > 1:5038598‑M2/25‑50 (MQ=255) aggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTc > 1:4186002‑M2/24‑50 (MQ=255) aggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTc < 1:2403498‑M2/27‑1 (MQ=255) gtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCg > 1:2557976‑M2/22‑50 (MQ=255) gtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCg > 1:5061332‑M2/22‑50 (MQ=255) gtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCg < 1:4827660‑M2/29‑1 (MQ=255) gtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCg < 1:388247‑M2/29‑1 (MQ=255) tcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGc < 1:3932070‑M2/30‑1 (MQ=255) catggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCt > 1:2613160‑M2/20‑50 (MQ=255) tggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCttt < 1:3619036‑M2/33‑1 (MQ=255) ggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTg > 1:6163711‑M2/17‑50 (MQ=255) gaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGc > 1:1396127‑M2/16‑50 (MQ=255) gaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGc > 1:2798143‑M2/16‑50 (MQ=255) aacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGccc > 1:1392800‑M2/14‑50 (MQ=255) cggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCtt > 1:40148‑M2/12‑50 (MQ=255) ggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCtt > 1:709820‑M2/11‑49 (MQ=255) ggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCtt > 1:2669454‑M2/11‑49 (MQ=255) ggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCtt > 1:2969127‑M2/11‑49 (MQ=255) ggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTc < 1:227973‑M2/40‑1 (MQ=255) aaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcac > 1:4494270‑M2/9‑50 (MQ=255) aatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcacc < 1:3626694‑M2/43‑1 (MQ=255) aatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcac > 1:4625534‑M2/8‑49 (MQ=255) tcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcacca > 1:6266441‑M2/6‑49 (MQ=255) cttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACcaca > 1:1659847‑M2/5‑50 (MQ=255) ttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAt > 1:4796870‑M2/4‑50 (MQ=255) tcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAt > 1:4868648‑M2/3‑49 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcaccac < 1:2686295‑M2/45‑1 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACcaca < 1:1456020‑M2/46‑1 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACcaca < 1:1282286‑M2/46‑1 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAt < 1:3245967‑M2/47‑1 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCa > 1:3578985‑M2/2‑50 (MQ=255) cTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCa < 1:4111972/49‑1 (MQ=255) cTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCa < 1:3770548/49‑1 (MQ=255) cTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCa < 1:804619/49‑1 (MQ=255) cTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCAc < 1:552400/50‑1 (MQ=255) cTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCAc > 1:2307580/1‑50 (MQ=255) | AAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTTCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCAC > NC_000913/586062‑586158 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |