| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,197,137 | 25956 bp→CAGATAATTCAA | [ymfD]–[ymgI] | 42 genes [ymfD], ymfE, lit, intE, xisE, ymfH, ymfI, ymfJ, ymfK, ymfT, ymfL, ymfM, oweE, ymfN, aaaE, ymfR, beeE, jayE, ymfQ, ycfK, tfaP, tfaE, stfE, pinE, mcrA, icdC, iraM, ymgK, ymgL, ycgX, bluR, bluF, ycgZ, ymgA, ariR, ymgC, pdeG, ymgF, ycgH, ymgD, ymgG, [ymgI] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1197137 | 1223092 | 25956 | 105 [0] | [0] 100 | [ymfD]–[ymgI] | [ymfD],ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,icdC,iraM,ymgK,ymgL,ycgX,bluR,bluF,ycgZ,ymgA,ariR,ymgC,pdeG,ymgF,ycgH,ymgD,ymgG,[ymgI] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1197136 | 0 (0.000) | 80 (1.280) +CAGATAATTCAA |
51/74 | 0.0 | 100% | coding (397/666 nt) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| ? | NC_000913 | 1223093 = | 0 (0.000) | coding (71/174 nt) | ymgI | uncharacterized protein YmgI | |||||
Only 100 of 117 total aligned reads displayed.
TAAGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1197088‑1197136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAA > NC_000913/1223093‑1223141 |||||||||||| TAAGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATC < 1:2202215/50‑1 AGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAG < 1:1204204/50‑1 AGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCA < 1:2602067/49‑1 AGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGAT < 1:6315183/50‑1 AGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGA > 1:359130/1‑49 GTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGAT > 1:1811100/1‑49 TCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAA < 1:3830662/50‑1 TCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAA < 1:1924973/50‑1 TCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATT > 1:2662134/1‑50 CACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATT > 1:1454327/1‑49 CACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATT > 1:1979756/1‑49 CACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATT > 1:3008677/1‑49 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTC > 1:2242669/1‑49 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTC < 1:4933555/49‑1 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATT < 1:1507361/48‑1 CCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAA < 1:4236453/50‑1 CTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAA < 1:4710632/50‑1 CTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCA > 1:1311064/1‑48 CTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCA > 1:3187990/1‑48 TCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAG > 1:6154771/1‑50 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCG > 1:1271249/1‑50 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGC < 1:1058647/49‑1 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAG < 1:4906623/48‑1 GATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTG > 1:4283721/1‑50 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTG < 1:88085/49‑1 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTG < 1:674984/49‑1 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGT < 1:3604212/48‑1 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGT < 1:6382420/48‑1 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGT < 1:5728758/48‑1 ATTTTAGTAATCTCTTGATGCTAAGAACGATCAGATAATTCAAAGCGTG < 1:4791378/49‑1 TTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGC > 1:4968125/1‑50 TTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCT > 1:3029448/1‑50 TAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGT > 1:3262274/1‑50 AGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGT < 1:5795860/49‑1 AGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGT < 1:223109/49‑1 GTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGA < 1:6223955/50‑1 GTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGA > 1:542936/1‑50 GTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTG < 1:4337203/49‑1 TAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT > 1:5246840/1‑50 AATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT > 1:4274565/1‑49 AATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT > 1:1679042/1‑49 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGA < 1:3767919/50‑1 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGA < 1:2118253/50‑1 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGA < 1:3110062/50‑1 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATG < 1:228808/49‑1 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATG < 1:4886284/49‑1 TCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGA > 1:4707136/1‑49 TCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGA > 1:2924336/1‑49 CTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGA > 1:2509035/1‑48 CTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG > 1:6291627/1‑49 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG < 1:1817079/48‑1 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG < 1:805270/48‑1 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG < 1:2835716/48‑1 TGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAA > 1:3961494/1‑50 GATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAAT > 1:4094623/1‑50 GATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGA < 1:644841/48‑1 GATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGG < 1:2202152/47‑1 ATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATT < 1:4094796/50‑1 ATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAAT < 1:5635175/49‑1 ATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAAT > 1:3596411/1‑49 TGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTA > 1:977478/1‑50 GCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTAT > 1:1641301/1‑50 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATG < 1:37891/50‑1 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTAT < 1:6194644/49‑1 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTAT < 1:246770/49‑1 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTAT < 1:4981985/49‑1 TAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGT > 1:3143416/1‑50 AAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTT > 1:1586113/1‑50 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTT < 1:2856873/50‑1 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTT > 1:4864450/1‑50 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTT < 1:4511425/50‑1 AACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT < 1:6153998/50‑1 ACTATCAGATAATTCAAAGCGTGGCTGTGATGCTAGGAATTATGTTTTT > 1:5132655/1‑49 ACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTT < 1:3536012/50‑1 ACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTT < 1:2538841/50‑1 ACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT > 1:762597/1‑49 CTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTA > 1:3717450/1‑50 CTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTA > 1:3371060/1‑50 TATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAC > 1:970105/1‑50 ATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACG > 1:1525135/1‑50 TCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGT < 1:689571/50‑1 TCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACG < 1:413842/49‑1 TCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAC < 1:5025907/48‑1 TCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAC < 1:2957071/48‑1 AGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTG > 1:3526055/1‑49 AGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTG < 1:5013457/49‑1 GATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTATGTGAA > 1:1962837/1‑50 GATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAA < 1:5082497/50‑1 ATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT > 1:3913597/1‑50 ATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT > 1:3405663/1‑50 ATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT > 1:5161167/1‑50 ATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT > 1:1323169/1‑50 ATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAG < 1:6426096/50‑1 ATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT > 1:2572615/1‑47 ATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACATGAATGA < 1:4910655/49‑1 TCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAA > 1:5663895/1‑50 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAAT < 1:6420359/49‑1 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAAT < 1:1250364/49‑1 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAAT < 1:1544060/49‑1 AAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAA > 1:4827647/1‑50 |||||||||||| TAAGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1197088‑1197136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAA > NC_000913/1223093‑1223141 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |