| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,400,325 | Δ81,931 bp | [abgT]–[azoR] | 87 genes [abgT], abgB, abgA, abgR, mcaS, smrA, dgcM, zntB, fnrS, ynaL, dbpA, ttcA, intR, xisR, rcbA, ralA, ralR, recT, recE, racC, ydaE, kilR, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, ynaA, lomR, insH‑5, lomR, stfR, tfaR, pinR, ynaE, ynaM, ttcC, uspF, ompN, micC, ydbK, ydbJ, hslJ, ldhA, ydbH, ynbE, ydbL, feaR, feaB, tynA, paaZ, paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK, paaX, paaY, ynbG, ydbA, insD‑2, insC‑2, ydbA, insI‑2, ydbA, pdxI, ydbD, ynbA, ynbB, ynbC, ynbD, [azoR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1400325 | 1482255 | 81931 | 87 [0] | [0] 85 | [abgT]–[azoR] | [abgT],abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,ttcA,intR,xisR,rcbA,ralA,ralR,recT,recE,racC,ydaE,kilR,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzpR,rzoR,trkG,ynaK,ydaY,ynaA,lomR,insH‑5,lomR,stfR,tfaR,pinR,ynaE,ynaM,ttcC,uspF,ompN,micC,ydbK,ydbJ,hslJ,ldhA,ydbH,ynbE,ydbL,feaR,feaB,tynA,paaZ,paaA,paaB,paaC,paaD,paaE,paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD‑2,insC‑2,ydbA,insI‑2,ydbA,pdxI,ydbD,ynbA,ynbB,ynbC,ynbD,[azoR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1400324 | 0 (0.000) | 85 (1.020) | 51/98 | 0.0 | 100% | coding (1450/1527 nt) | abgT | p‑aminobenzoyl glutamate:H(+) symporter |
| ? | NC_000913 | 1482256 = | 0 (0.000) | coding (605/606 nt) | azoR | FMN dependent NADH:quinone oxidoreductase | |||||
‑CCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1400275‑1400324‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT > NC_000913/1482256‑1482304 aCCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACT < 1:4068422/49‑1 CCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTA > 1:4701009/1‑50 CCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTA < 1:4067862/50‑1 CTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTAT < 1:5796359/50‑1 TATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATG > 1:3741209/1‑50 TCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGC < 1:4927422/49‑1 GGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAG > 1:2655237/1‑49 GGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAG < 1:4539486/49‑1 GCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGA > 1:3543694/1‑49 GCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGA > 1:4835815/1‑49 CAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAA > 1:3314839/1‑50 CAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAA < 1:3332341/50‑1 CAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAA > 1:3867876/1‑50 AGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAAC < 1:1719052/50‑1 AGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAA > 1:5246533/1‑49 GACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAAC > 1:207584/1‑49 GACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAAC > 1:1645476/1‑49 GACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAAC > 1:5115465/1‑49 ACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAA < 1:487088/50‑1 ACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAA > 1:5139728/1‑50 ACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAA > 1:2805993/1‑50 ACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAA > 1:3047129/1‑50 CCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAAT < 1:1079895/50‑1 CCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAAT < 1:72647/50‑1 CGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATG > 1:4511570/1‑50 CGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATG > 1:4155577/1‑50 CGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATG < 1:6427293/50‑1 GACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGC < 1:4319607/50‑1 GACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGC < 1:3313351/50‑1 GACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGC < 1:5243555/50‑1 GACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGC < 1:5159962/50‑1 GACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGC < 1:3695981/50‑1 GACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGC > 1:4042668/1‑50 ACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCT > 1:3206377/1‑50 ACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCT < 1:2513670/50‑1 ACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCT < 1:4885528/50‑1 CAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAGACAATGCTG < 1:1713462/50‑1 CAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTG < 1:4546393/50‑1 CAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTG > 1:3120599/1‑50 CAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTG > 1:2992398/1‑50 AAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGT < 1:677754/50‑1 AAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGT < 1:5714242/50‑1 GATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCG < 1:4866024/50‑1 ATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGA > 1:686715/1‑50 ATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGA > 1:5669971/1‑50 TACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGAT < 1:4770583/50‑1 TACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGAT < 1:4543871/50‑1 ACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATG > 1:5011233/1‑50 CCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGG > 1:4353825/1‑50 CCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATG < 1:1493001/49‑1 CACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGC > 1:282778/1‑50 CACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGC < 1:2130460/50‑1 CACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGC < 1:2090408/50‑1 ACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCT > 1:2003232/1‑50 CGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTG > 1:4075487/1‑50 CGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTG < 1:3942887/50‑1 GCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTGGATGGCTGC < 1:6343727/50‑1 GCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGC > 1:6288201/1‑50 GCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGC < 1:6311597/50‑1 tcGCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTC < 1:2853625/48‑1 cGCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGT > 1:3944021/2‑48 cGCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGT > 1:3606937/2‑48 GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCA < 1:1444674/49‑1 GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCA < 1:341318/49‑1 GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCA < 1:4538481/49‑1 GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGT > 1:6191173/1‑47 CAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGA > 1:6170112/1‑50 CAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGA > 1:6168268/1‑50 CAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGA > 1:4412651/1‑50 AGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAC > 1:820449/1‑50 AGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAC > 1:5740701/1‑50 GCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACT > 1:2523969/1‑50 GCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACT < 1:2327975/50‑1 CCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTG > 1:4324954/1‑50 CATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGT < 1:4656058/50‑1 CATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGT < 1:2648995/50‑1 TACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGC > 1:3902420/1‑50 TACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGC > 1:2186100/1‑50 ACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCT > 1:5647002/1‑50 ACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCT > 1:1231368/1‑50 ACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCT > 1:1149489/1‑50 CTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT < 1:6339259/50‑1 CTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT > 1:1877547/1‑50 CTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCT < 1:3955176/49‑1 CTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCT < 1:2294742/49‑1 ‑CCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1400275‑1400324‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT > NC_000913/1482256‑1482304 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |