| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,400,325 | Δ81,931 bp | [abgT]–[azoR] | 87 genes [abgT], abgB, abgA, abgR, mcaS, smrA, dgcM, zntB, fnrS, ynaL, dbpA, ttcA, intR, xisR, rcbA, ralA, ralR, recT, recE, racC, ydaE, kilR, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, ynaA, lomR, insH‑5, lomR, stfR, tfaR, pinR, ynaE, ynaM, ttcC, uspF, ompN, micC, ydbK, ydbJ, hslJ, ldhA, ydbH, ynbE, ydbL, feaR, feaB, tynA, paaZ, paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK, paaX, paaY, ynbG, ydbA, insD‑2, insC‑2, ydbA, insI‑2, ydbA, pdxI, ydbD, ynbA, ynbB, ynbC, ynbD, [azoR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1400325 | 1482255 | 81931 | 87 [0] | [0] 85 | [abgT]–[azoR] | [abgT],abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,ttcA,intR,xisR,rcbA,ralA,ralR,recT,recE,racC,ydaE,kilR,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzpR,rzoR,trkG,ynaK,ydaY,ynaA,lomR,insH‑5,lomR,stfR,tfaR,pinR,ynaE,ynaM,ttcC,uspF,ompN,micC,ydbK,ydbJ,hslJ,ldhA,ydbH,ynbE,ydbL,feaR,feaB,tynA,paaZ,paaA,paaB,paaC,paaD,paaE,paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD‑2,insC‑2,ydbA,insI‑2,ydbA,pdxI,ydbD,ynbA,ynbB,ynbC,ynbD,[azoR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1400324 | 0 (0.000) | 85 (1.020) | 51/98 | 0.0 | 100% | coding (1450/1527 nt) | abgT | p‑aminobenzoyl glutamate:H(+) symporter |
| ? | NC_000913 | 1482256 = | 0 (0.000) | coding (605/606 nt) | azoR | FMN dependent NADH:quinone oxidoreductase | |||||
TTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT > NC_000913/1482207‑1482304 | acctatcggcagaccgacaagataccacgccagcacatcgcagccatact < 1:4068422‑M2/1‑1 (MQ=255) cctatcggcagaccgacaagataccacgccagcacatcgcagccatacTa > 1:4701009‑M2/49‑50 (MQ=255) cctatcggcagaccgacaagataccacgccagcacatcgcagccatacTa < 1:4067862‑M2/2‑1 (MQ=255) ctatcggcagaccgacaagataccacgccagcacatcgcagccatacTAt < 1:5796359‑M2/3‑1 (MQ=255) tatcggcagaccgacaagataccacgccagcacatcgcagccatacTATg > 1:3741209‑M2/47‑50 (MQ=255) tcggcagaccgacaagataccacgccagcacatcgcagccatacTATGc < 1:4927422‑M2/5‑1 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATGCAg > 1:2655237‑M2/43‑49 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATGCAg < 1:4539486‑M2/7‑1 (MQ=255) gcagaccgacaagataccacgccagcacatcgcagccatacTATGCAGa > 1:3543694‑M2/42‑49 (MQ=255) gcagaccgacaagataccacgccagcacatcgcagccatacTATGCAGa > 1:4835815‑M2/42‑49 (MQ=255) cagaccgacaagataccacgccagcacatcgcagccatacTATGCAGaaa > 1:3314839‑M2/41‑50 (MQ=255) cagaccgacaagataccacgccagcacatcgcagccatacTATGCAGaaa < 1:3332341‑M2/10‑1 (MQ=255) cagaccgacaagataccacgccagcacatcgcagccatacTATGCAGaaa > 1:3867876‑M2/41‑50 (MQ=255) agaccgacaagataccacgccagcacatcgcagccatacTATGCAGaaa > 1:5246533‑M2/40‑49 (MQ=255) agaccgacaagataccacgccagcacatcgcagccatacTATGCAGAAAc < 1:1719052‑M2/11‑1 (MQ=255) gaccgacaagataccacgccagcacatcgcagccatacTATGCAGAAAc > 1:207584‑M2/39‑49 (MQ=255) gaccgacaagataccacgccagcacatcgcagccatacTATGCAGAAAc > 1:1645476‑M2/39‑49 (MQ=255) gaccgacaagataccacgccagcacatcgcagccatacTATGCAGAAAc > 1:5115465‑M2/39‑49 (MQ=255) accgacaagataccacgccagcacatcgcagccatacTATGCAGAAACaa < 1:487088‑M2/13‑1 (MQ=255) accgacaagataccacgccagcacatcgcagccatacTATGCAGAAACaa > 1:5139728‑M2/38‑50 (MQ=255) accgacaagataccacgccagcacatcgcagccatacTATGCAGAAACaa > 1:2805993‑M2/38‑50 (MQ=255) accgacaagataccacgccagcacatcgcagccatacTATGCAGAAACaa > 1:3047129‑M2/38‑50 (MQ=255) ccgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAAt < 1:1079895‑M2/14‑1 (MQ=255) ccgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAAt < 1:72647‑M2/14‑1 (MQ=255) cgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATg > 1:4511570‑M2/36‑50 (MQ=255) cgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATg > 1:4155577‑M2/36‑50 (MQ=255) cgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATg < 1:6427293‑M2/15‑1 (MQ=255) gacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGc < 1:4319607‑M2/16‑1 (MQ=255) gacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGc < 1:3313351‑M2/16‑1 (MQ=255) gacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGc < 1:5243555‑M2/16‑1 (MQ=255) gacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGc < 1:5159962‑M2/16‑1 (MQ=255) gacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGc < 1:3695981‑M2/16‑1 (MQ=255) gacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGc > 1:4042668‑M2/35‑50 (MQ=255) acaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCt > 1:3206377‑M2/34‑50 (MQ=255) acaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCt < 1:2513670‑M2/17‑1 (MQ=255) acaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCt < 1:4885528‑M2/17‑1 (MQ=255) caagataccacgccagcacatcgcagccatacTATGCAGAGACAATGCTg < 1:1713462‑M2/18‑1 (MQ=255) caagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTg < 1:4546393‑M2/18‑1 (MQ=255) caagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTg > 1:3120599‑M2/33‑50 (MQ=255) caagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTg > 1:2992398‑M2/33‑50 (MQ=255) aagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGt < 1:677754‑M2/19‑1 (MQ=255) aagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGt < 1:5714242‑M2/19‑1 (MQ=255) gataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCg < 1:4866024‑M2/21‑1 (MQ=255) ataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGa > 1:686715‑M2/29‑50 (MQ=255) ataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGa > 1:5669971‑M2/29‑50 (MQ=255) taccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGAt < 1:4770583‑M2/23‑1 (MQ=255) taccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGAt < 1:4543871‑M2/23‑1 (MQ=255) accacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATg > 1:5011233‑M2/27‑50 (MQ=255) ccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATgg > 1:4353825‑M2/26‑50 (MQ=255) ccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATg < 1:1493001‑M2/24‑1 (MQ=255) cacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgc > 1:282778‑M2/25‑50 (MQ=255) cacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgc < 1:2130460‑M2/26‑1 (MQ=255) cacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgc < 1:2090408‑M2/26‑1 (MQ=255) acgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgct > 1:2003232‑M2/24‑50 (MQ=255) cgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgctg > 1:4075487‑M2/23‑50 (MQ=255) cgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgctg < 1:3942887‑M2/28‑1 (MQ=255) gccagcacatcgcagccatacTATGCAGAAACAATGCTGTGGATGgctgc < 1:6343727‑M2/29‑1 (MQ=255) gccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgctgc > 1:6288201‑M2/22‑50 (MQ=255) gccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgctgc < 1:6311597‑M2/29‑1 (MQ=255) tcgcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTc < 1:2853625‑M2/38‑1 (MQ=255) cgcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGt > 1:3944021‑M2/12‑48 (MQ=255) cgcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGt > 1:3606937‑M2/12‑48 (MQ=255) gcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGt > 1:6191173‑M2/11‑47 (MQ=255) gcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCa < 1:1444674‑M2/39‑1 (MQ=255) gcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCa < 1:341318‑M2/39‑1 (MQ=255) gcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCa < 1:4538481‑M2/39‑1 (MQ=255) cagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGa > 1:6170112‑M2/10‑50 (MQ=255) cagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGa > 1:6168268‑M2/10‑50 (MQ=255) cagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGa > 1:4412651‑M2/10‑50 (MQ=255) agccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAc > 1:820449‑M2/9‑50 (MQ=255) agccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAc > 1:5740701‑M2/9‑50 (MQ=255) gccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACt > 1:2523969‑M2/8‑50 (MQ=255) gccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACt < 1:2327975‑M2/43‑1 (MQ=255) ccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtg > 1:4324954‑M2/7‑50 (MQ=255) catacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgt < 1:4656058‑M2/45‑1 (MQ=255) catacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgt < 1:2648995‑M2/45‑1 (MQ=255) tacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGc > 1:3902420‑M2/4‑50 (MQ=255) tacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGc > 1:2186100‑M2/4‑50 (MQ=255) acTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCt > 1:5647002‑M2/3‑50 (MQ=255) acTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCt > 1:1231368‑M2/3‑50 (MQ=255) acTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCt > 1:1149489‑M2/3‑50 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCtt < 1:6339259‑M2/49‑1 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCtt > 1:1877547‑M2/2‑50 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCt < 1:3955176‑M2/48‑1 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCt < 1:2294742‑M2/48‑1 (MQ=255) | TTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT > NC_000913/1482207‑1482304 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |