| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,509,562 | Δ46,201 bp | [hicB]–maeA | 43 genes [hicB], ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ortT, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, rhsE, ydcD, yncO, yncI, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU, yddJ, yddK, yddL, yddG, fdnG, fdnH, fdnI, yddM, adhP, maeA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1509562 | 1555762 | 46201 | 76 [0] | [0] 75 | [hicB]–maeA | [hicB],ydcR,ydcS,ydcT,ydcU,ydcV,patD,yncL,ortT,ydcY,ydcZ,mnaT,curA,mcbR,yncD,yncE,ansP,yncG,yncH,rhsE,ydcD,yncO,yncI,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,narZ,narU,yddJ,yddK,yddL,yddG,fdnG,fdnH,fdnI,yddM,adhP,maeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1509561 | 0 (0.000) | 74 (0.890) | 49/98 | 0.0 | 100% | coding (54/417 nt) | hicB | antitoxin of the HicA‑HicB toxin‑antitoxin system |
| ? | NC_000913 | 1555763 = | 0 (0.000) | intergenic (‑94/+63) | maeA/sra | malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22 | |||||
TTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1509513‑1509561‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGA > NC_000913/1555763‑1555811 TTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTA < 1:3376815/50‑1 TATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTA > 1:5349425/1‑49 ATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAA > 1:4486588/1‑50 ATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAA > 1:3757147/1‑50 ATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAA < 1:3432387/49‑1 ATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAA < 1:2690826/49‑1 CGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAA > 1:4966161/1‑49 GTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAA < 1:648866/50‑1 TCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAA < 1:6431478/50‑1 TCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAA > 1:3515405/1‑50 ACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACA < 1:5768911/50‑1 CTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACAC > 1:2626048/1‑50 TCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACAC > 1:3079016/1‑49 TCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACAC > 1:2866293/1‑49 TTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCAT > 1:1041233/1‑50 TTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCAT > 1:5082148/1‑50 TTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCAT > 1:1188022/1‑50 TTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCAT > 1:6167116/1‑50 ACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATT < 1:1905378/49‑1 ACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCAT < 1:1186004/48‑1 ACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCA < 1:6146798/47‑1 ACACCCGCGCCGGAAGGCGGTTATAAGGTTTCTAAACAAAAACACCATT < 1:5020900/49‑1 CACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTG < 1:319390/49‑1 CACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTG < 1:1131907/49‑1 ACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCG < 1:5021685/50‑1 CCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCA < 1:2374742/50‑1 CGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAG > 1:4356278/1‑50 GCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGG > 1:761757/1‑50 GCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGG > 1:1354431/1‑50 CGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGG > 1:4166828/1‑49 GCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCA < 1:5721621/50‑1 GCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGC > 1:465117/1‑49 GCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGC > 1:807384/1‑49 GCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGC > 1:6278922/1‑49 CGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAAT > 1:5944176/1‑50 CGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAAT < 1:1163122/50‑1 CGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAAT > 1:6090219/1‑50 GGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATG > 1:219438/1‑50 GAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGG > 1:2034443/1‑50 GAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGG > 1:3218271/1‑50 GAAGGCGGTTAAATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGG < 1:3768209/50‑1 AAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGT < 1:2874326/50‑1 AAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGT > 1:4635186/1‑50 AAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGT > 1:621217/1‑50 AGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTG < 1:5226288/50‑1 AGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTG < 1:2671856/50‑1 AGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTG > 1:6226075/1‑50 AGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTG > 1:109548/1‑50 GGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGT > 1:4742037/1‑50 GCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTT < 1:4178377/50‑1 TTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAAT > 1:1675280/1‑50 TATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATC > 1:5997986/1‑50 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCG > 1:3640816/1‑50 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATC < 1:120566/49‑1 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATC < 1:6095797/49‑1 TATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGT > 1:4998940/1‑50 TATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGT > 1:4887968/1‑50 TATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGT > 1:5886772/1‑50 TATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGT < 1:271397/50‑1 TATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGT < 1:1661758/50‑1 TATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCG < 1:1225406/49‑1 ATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGT > 1:4232289/1‑49 ATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGT > 1:3553198/1‑49 TGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCA < 1:6367137/50‑1 TTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTG < 1:4180074/50‑1 TTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATT > 1:906125/1‑48 TCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAG > 1:2648001/1‑50 TCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGA < 1:148355/49‑1 CTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAG > 1:248236/1‑49 CTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAG > 1:6059786/1‑49 CTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAG > 1:5621523/1‑49 TAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGA > 1:1605928/1‑50 TAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGA > 1:1447880/1‑50 TAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGA > 1:4987891/1‑50 TTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1509513‑1509561‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGA > NC_000913/1555763‑1555811 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |