| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,509,562 | Δ46,201 bp | [hicB]–maeA | 43 genes [hicB], ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ortT, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, rhsE, ydcD, yncO, yncI, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU, yddJ, yddK, yddL, yddG, fdnG, fdnH, fdnI, yddM, adhP, maeA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1509562 | 1555762 | 46201 | 76 [0] | [0] 75 | [hicB]–maeA | [hicB],ydcR,ydcS,ydcT,ydcU,ydcV,patD,yncL,ortT,ydcY,ydcZ,mnaT,curA,mcbR,yncD,yncE,ansP,yncG,yncH,rhsE,ydcD,yncO,yncI,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,narZ,narU,yddJ,yddK,yddL,yddG,fdnG,fdnH,fdnI,yddM,adhP,maeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1509561 | 0 (0.000) | 74 (0.890) | 49/98 | 0.0 | 100% | coding (54/417 nt) | hicB | antitoxin of the HicA‑HicB toxin‑antitoxin system |
| ? | NC_000913 | 1555763 = | 0 (0.000) | intergenic (‑94/+63) | maeA/sra | malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22 | |||||
CGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGAC > NC_000913/1555714‑1555812 | ttatcccgtcactcttacacccgcgccggaaggcggttatatggtttcta < 1:3376815‑M2/1‑1 (MQ=255) tatcccgtcactcttacacccgcgccggaaggcggttatatggtttcta > 1:5349425‑M2/49‑49 (MQ=255) atcccgtcactcttacacccgcgccggaaggcggttatatggtttctaaa > 1:4486588‑M2/48‑50 (MQ=255) atcccgtcactcttacacccgcgccggaaggcggttatatggtttctaaa > 1:3757147‑M2/48‑50 (MQ=255) atcccgtcactcttacacccgcgccggaaggcggttatatggtttctaa < 1:3432387‑M2/2‑1 (MQ=255) atcccgtcactcttacacccgcgccggaaggcggttatatggtttctaa < 1:2690826‑M2/2‑1 (MQ=255) cgtcactcttacacccgcgccggaaggcggttatatggtttctAAACaa > 1:4966161‑M2/44‑49 (MQ=255) gtcactcttacacccgcgccggaaggcggttatatggtttctAAACaaaa < 1:648866‑M2/8‑1 (MQ=255) tcactcttacacccgcgccggaaggcggttatatggtttctAAACaaaaa < 1:6431478‑M2/9‑1 (MQ=255) tcactcttacacccgcgccggaaggcggttatatggtttctAAACaaaaa > 1:3515405‑M2/42‑50 (MQ=255) actcttacacccgcgccggaaggcggttatatggtttctAAACAAAAaca < 1:5768911‑M2/11‑1 (MQ=255) ctcttacacccgcgccggaaggcggttatatggtttctAAACAAAAacac > 1:2626048‑M2/39‑50 (MQ=255) tcttacacccgcgccggaaggcggttatatggtttctAAACAAAAacac > 1:3079016‑M2/38‑49 (MQ=255) tcttacacccgcgccggaaggcggttatatggtttctAAACAAAAacac > 1:2866293‑M2/38‑49 (MQ=255) ttacacccgcgccggaaggcggttatatggtttctAAACAAAAACACCAt > 1:1041233‑M2/36‑50 (MQ=255) ttacacccgcgccggaaggcggttatatggtttctAAACAAAAACACCAt > 1:5082148‑M2/36‑50 (MQ=255) ttacacccgcgccggaaggcggttatatggtttctAAACAAAAACACCAt > 1:1188022‑M2/36‑50 (MQ=255) ttacacccgcgccggaaggcggttatatggtttctAAACAAAAACACCAt > 1:6167116‑M2/36‑50 (MQ=255) acacccgcgccggaaggcggttatatggtttctAAACAAAAACACCa < 1:6146798‑M2/14‑1 (MQ=255) acacccgcgccggaaggcggttatatggtttctAAACAAAAACACCAtt < 1:1905378‑M2/16‑1 (MQ=255) acacccgcgccggaaggcggttatatggtttctAAACAAAAACACCAt < 1:1186004‑M2/15‑1 (MQ=255) acacccgcgccggaaggcggttataaggtttctAAACAAAAACACCAtt < 1:5020900‑M2/16‑1 (MQ=255) cacccgcgccggaaggcggttatatggtttctAAACAAAAACACCATTg < 1:1131907‑M2/17‑1 (MQ=255) cacccgcgccggaaggcggttatatggtttctAAACAAAAACACCATTg < 1:319390‑M2/17‑1 (MQ=255) acccgcgccggaaggcggttatatggtttctAAACAAAAACACCATTgcg < 1:5021685‑M2/19‑1 (MQ=255) ccgcgccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCa < 1:2374742‑M2/21‑1 (MQ=255) cgcgccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAg > 1:4356278‑M2/29‑50 (MQ=255) gcgccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAgg > 1:1354431‑M2/28‑50 (MQ=255) gcgccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAgg > 1:761757‑M2/28‑50 (MQ=255) cgccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAgg > 1:4166828‑M2/27‑49 (MQ=255) gccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGc > 1:807384‑M2/26‑49 (MQ=255) gccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGc > 1:465117‑M2/26‑49 (MQ=255) gccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGc > 1:6278922‑M2/26‑49 (MQ=255) gccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCa < 1:5721621‑M2/25‑1 (MQ=255) cggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAAt > 1:5944176‑M2/24‑50 (MQ=255) cggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAAt > 1:6090219‑M2/24‑50 (MQ=255) cggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAAt < 1:1163122‑M2/27‑1 (MQ=255) ggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATg > 1:219438‑M2/23‑50 (MQ=255) gaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATgg > 1:3218271‑M2/22‑50 (MQ=255) gaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATgg > 1:2034443‑M2/22‑50 (MQ=255) gaaggcggttaaatggtttctAAACAAAAACACCATTGCGCAGGCAATgg < 1:3768209‑M2/29‑1 (MQ=255) aaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGgt > 1:621217‑M2/21‑50 (MQ=255) aaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGgt > 1:4635186‑M2/21‑50 (MQ=255) aaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGgt < 1:2874326‑M2/30‑1 (MQ=255) aggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGgtg > 1:6226075‑M2/20‑50 (MQ=255) aggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGgtg < 1:5226288‑M2/31‑1 (MQ=255) aggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGgtg > 1:109548‑M2/20‑50 (MQ=255) aggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGgtg < 1:2671856‑M2/31‑1 (MQ=255) ggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGgtgt > 1:4742037‑M2/19‑50 (MQ=255) gcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGtt < 1:4178377‑M2/33‑1 (MQ=255) ttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAAt > 1:1675280‑M2/14‑50 (MQ=255) tatatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATc > 1:5997986‑M2/13‑50 (MQ=255) atatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATc < 1:120566‑M2/38‑1 (MQ=255) atatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATc < 1:6095797‑M2/38‑1 (MQ=255) atatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCg > 1:3640816‑M2/12‑50 (MQ=255) tatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCg < 1:1225406‑M2/39‑1 (MQ=255) tatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGt < 1:271397‑M2/40‑1 (MQ=255) tatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGt > 1:5886772‑M2/11‑50 (MQ=255) tatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGt > 1:4998940‑M2/11‑50 (MQ=255) tatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGt > 1:4887968‑M2/11‑50 (MQ=255) tatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGt < 1:1661758‑M2/40‑1 (MQ=255) atggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGt > 1:3553198‑M2/10‑49 (MQ=255) atggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGt > 1:4232289‑M2/10‑49 (MQ=255) tggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCa < 1:6367137‑M2/42‑1 (MQ=255) tttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTg < 1:4180074‑M2/45‑1 (MQ=255) ttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCAtt > 1:906125‑M2/5‑48 (MQ=255) tctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGa < 1:148355‑M2/46‑1 (MQ=255) tctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAg > 1:2648001‑M2/4‑50 (MQ=255) ctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAg > 1:6059786‑M2/3‑49 (MQ=255) ctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAg > 1:248236‑M2/3‑49 (MQ=255) ctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAg > 1:5621523‑M2/3‑49 (MQ=255) tAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGa > 1:1605928‑M2/2‑50 (MQ=255) tAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGa > 1:1447880‑M2/2‑50 (MQ=255) tAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGa > 1:4987891‑M2/2‑50 (MQ=255) aaacaaaaacaCCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGAc > 1:2527724/1‑50 (MQ=255) | CGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGAC > NC_000913/1555714‑1555812 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |