| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,756,160 | Δ35,091 bp | [intA]–[lhgO] | 33 genes [intA], yfjH, alpA, yfjI, yfjJ, abpB, abpA, yfjM, rnlA, rnlB, yfjP, yfjQ, yfjR, ypjK, yfjS, yfjT, yfjU, yfjV, yfjW, ypjI, yfjX, yfjY, ypjJ, yfjZ, ypjF, ypjA, pinH, ypjB, ypjC, ileY, ygaQ, csiD, [lhgO] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2756160 | 2791250 | 35091 | 103 [0] | [0] 106 | [intA]–[lhgO] | [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjV,yfjW,ypjI,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,pinH,ypjB,ypjC,ileY,ygaQ,csiD,[lhgO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2756159 | 0 (0.000) | 94 (1.160) | 57/96 | 0.0 | 100% | coding (1/1242 nt) | intA | CP4‑57 prophage; integrase |
| ? | NC_000913 | 2791251 = | 0 (0.000) | intergenic (+1/‑22) | lhgO/gabD | L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase | |||||
Only 100 of 103 total aligned reads displayed.
AACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2756109‑2756159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC > NC_000913/2791251‑2791299 AACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA < 1:863705/50‑1AACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA > 1:3864545/1‑50AACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA > 1:4673460/1‑50 CGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACC > 1:3417297/1‑50 CGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACC > 1:1787572/1‑50 CGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACC > 1:5120758/1‑50 GAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCT > 1:4061322/1‑50 GAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCT < 1:4214527/50‑1 GAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCT < 1:5299662/50‑1 GAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCT < 1:285623/50‑1 AAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTT < 1:3617143/50‑1 AAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT > 1:4801817/1‑50 AAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTG < 1:4475232/50‑1 AGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGA < 1:3687859/50‑1 GCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAA < 1:5008456/50‑1 CTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAA < 1:2833325/50‑1 CTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAA < 1:1177978/50‑1 CTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAA > 1:34638/1‑49 TCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA > 1:4593686/1‑50 TCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA > 1:5174614/1‑50 CTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA > 1:5491553/1‑49 CTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA > 1:6310236/1‑49 TATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA > 1:3881458/1‑48 TATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA > 1:6154039/1‑48 ATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAG > 1:1306580/1‑50 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAG > 1:1263101/1‑49 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACA < 1:2281692/48‑1 TGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGA > 1:338767/1‑50 TGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGA > 1:6165006/1‑50 GTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGAT > 1:439478/1‑50 GTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGA < 1:6118619/49‑1 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG < 1:4250708/50‑1 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG > 1:4399050/1‑50 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG < 1:695905/50‑1 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGAT < 1:120221/49‑1 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGAT < 1:6048893/49‑1 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGAT < 1:3167233/49‑1 TTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG > 1:1562769/1‑49 TACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG > 1:5493328/1‑48 TACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG > 1:4482620/1‑48 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC > 1:5006992/1‑50 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC < 1:159393/50‑1 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC > 1:4774014/1‑50 GTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC > 1:4144996/1‑49 GTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC > 1:1689396/1‑49 ggCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGA < 1:2473546/48‑1 CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAA < 1:5817731/50‑1 CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAA < 1:5311308/50‑1 TAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAAC > 1:328701/1‑50 TAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAAC > 1:4093870/1‑50 AACGCAGGGAGACTCCCCACCTTTGAAACCAGGATGTAGCGACGAAACT > 1:4576128/1‑49 AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACT < 1:5738242/49‑1 AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAAC < 1:399851/48‑1 CGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAA > 1:515300/1‑50 CGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAA < 1:2315385/50‑1 CGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAA < 1:4857819/50‑1 GCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAAC > 1:6164607/1‑50 GCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAAC < 1:5793572/50‑1 GCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAAC < 1:3630557/50‑1 GCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAAC < 1:1447532/50‑1 GCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAAC < 1:2450846/50‑1 CAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACG < 1:1411619/50‑1 CAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAAC > 1:4880690/1‑49 AGGGCGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGA > 1:4906365/1‑50 AGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGA > 1:3420841/1‑50 AGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGA > 1:1412551/1‑50 AGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGA > 1:3022428/1‑50 GGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGA > 1:4279911/1‑49 GGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGA > 1:1914792/1‑49 GGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACA < 1:4778681/50‑1 GGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGA > 1:2586384/1‑48 GAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAG < 1:1954894/50‑1 GAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAG > 1:3312372/1‑50 AGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGT < 1:4118009/50‑1 AGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAG > 1:6172272/1‑49 AGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAG > 1:5399795/1‑49 ACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAA > 1:4808968/1‑50 ACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAA > 1:4136971/1‑50 CTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAAC > 1:4695367/1‑50 CTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAAC < 1:4508187/50‑1 TCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACT > 1:5390826/1‑50 CCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACT > 1:595660/1‑49 CCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACT > 1:4316371/1‑49 CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTA > 1:1613074/1‑50 CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTA > 1:5732636/1‑50 CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTT < 1:2825869/49‑1 CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTT < 1:2398744/49‑1 CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACT < 1:4589215/48‑1 CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAAAGACAGTAACTT < 1:5072658/49‑1 CCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAT > 1:5784289/1‑50 CCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAT < 1:2320647/50‑1 CCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAT > 1:4794078/1‑50 CACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATT < 1:5636150/50‑1 CACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATT < 1:5852952/50‑1 ACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC > 1:533869/1‑50 ACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC > 1:321202/1‑50 ACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC < 1:5213900/50‑1 ACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC < 1:3056348/50‑1 ACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC < 1:5018327/50‑1 ACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC < 1:817213/50‑1 AACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2756109‑2756159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC > NC_000913/2791251‑2791299 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |