| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,756,160 | Δ35,091 bp | [intA]–[lhgO] | 33 genes [intA], yfjH, alpA, yfjI, yfjJ, abpB, abpA, yfjM, rnlA, rnlB, yfjP, yfjQ, yfjR, ypjK, yfjS, yfjT, yfjU, yfjV, yfjW, ypjI, yfjX, yfjY, ypjJ, yfjZ, ypjF, ypjA, pinH, ypjB, ypjC, ileY, ygaQ, csiD, [lhgO] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2756160 | 2791250 | 35091 | 103 [0] | [0] 106 | [intA]–[lhgO] | [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjV,yfjW,ypjI,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,pinH,ypjB,ypjC,ileY,ygaQ,csiD,[lhgO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2756159 | 0 (0.000) | 94 (1.160) | 57/96 | 0.0 | 100% | coding (1/1242 nt) | intA | CP4‑57 prophage; integrase |
| ? | NC_000913 | 2791251 = | 0 (0.000) | intergenic (+1/‑22) | lhgO/gabD | L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase | |||||
Only 100 of 103 total aligned reads displayed.
AACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAA > NC_000913/2756109‑2756208 | aaCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA < 1:863705‑M1/50‑1 (MQ=255)aaCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA > 1:3864545‑M1/1‑50 (MQ=255)aaCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA > 1:4673460‑M1/1‑50 (MQ=255) cGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcc > 1:3417297‑M1/1‑48 (MQ=255) cGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcc > 1:1787572‑M1/1‑48 (MQ=255) cGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcc > 1:5120758‑M1/1‑48 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct > 1:4061322‑M1/1‑47 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct < 1:4214527‑M1/50‑4 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct < 1:5299662‑M1/50‑4 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct < 1:285623‑M1/50‑4 (MQ=255) aaaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctt < 1:3617143‑M1/50‑5 (MQ=255) aaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt > 1:4801817‑M1/1‑45 (MQ=255) aaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttg < 1:4475232‑M1/50‑7 (MQ=255) aGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttga < 1:3687859‑M1/50‑8 (MQ=255) gCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaa < 1:5008456‑M1/50‑9 (MQ=255) ctctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaa < 1:2833325‑M1/50‑10 (MQ=255) ctctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaa < 1:1177978‑M1/50‑10 (MQ=255) ctctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaa > 1:34638‑M1/1‑41 (MQ=255) tctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaa > 1:4593686‑M1/1‑40 (MQ=255) tctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaa > 1:5174614‑M1/1‑40 (MQ=255) ctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaa > 1:5491553‑M1/1‑39 (MQ=255) ctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaa > 1:6310236‑M1/1‑39 (MQ=255) tATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaa > 1:3881458‑M1/1‑38 (MQ=255) tATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaa > 1:6154039‑M1/1‑38 (MQ=255) aTTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacag > 1:1306580‑M1/1‑37 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacag > 1:1263101‑M1/1‑36 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaaca < 1:2281692‑M1/48‑13 (MQ=255) tGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacagga > 1:338767‑M1/1‑35 (MQ=255) tGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacagga > 1:6165006‑M1/1‑35 (MQ=255) gTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggat > 1:439478‑M1/1‑34 (MQ=255) gTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacagga < 1:6118619‑M1/49‑16 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg < 1:4250708‑M1/50‑18 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg > 1:4399050‑M1/1‑33 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg < 1:695905‑M1/50‑18 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggat < 1:120221‑M1/49‑17 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggat < 1:6048893‑M1/49‑17 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggat < 1:3167233‑M1/49‑17 (MQ=255) ttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg > 1:1562769‑M1/1‑32 (MQ=255) tACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg > 1:5493328‑M1/1‑31 (MQ=255) tACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg > 1:4482620‑M1/1‑31 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc > 1:5006992‑M1/1‑29 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc < 1:159393‑M1/50‑22 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc > 1:4774014‑M1/1‑29 (MQ=255) gTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc > 1:4144996‑M1/1‑28 (MQ=255) gTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc > 1:1689396‑M1/1‑28 (MQ=255) ggctaAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatga < 1:2473546‑M1/48‑27 (MQ=255) cTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaa < 1:5817731‑M1/50‑29 (MQ=255) cTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaa < 1:5311308‑M1/50‑29 (MQ=255) tAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaac > 1:328701‑M1/1‑21 (MQ=255) tAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaac > 1:4093870‑M1/1‑21 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaccaggatgtagcgacgaaact > 1:4576128‑M1/1‑19 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaact < 1:5738242‑M1/49‑31 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaac < 1:399851‑M1/48‑30 (MQ=255) cGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaa > 1:515300‑M1/1‑17 (MQ=255) cGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaa < 1:2315385‑M1/50‑34 (MQ=255) cGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaa < 1:4857819‑M1/50‑34 (MQ=255) gCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaac > 1:6164607‑M1/1‑16 (MQ=255) gCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaac < 1:5793572‑M1/50‑35 (MQ=255) gCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaac < 1:3630557‑M1/50‑35 (MQ=255) gCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaac < 1:1447532‑M1/50‑35 (MQ=255) gCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaac < 1:2450846‑M1/50‑35 (MQ=255) cAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacg < 1:1411619‑M1/50‑36 (MQ=255) cAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaac > 1:4880690‑M1/1‑15 (MQ=255) aGGGCGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga > 1:4906365‑M1/1‑14 (MQ=255) aGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga > 1:3420841‑M1/1‑14 (MQ=255) aGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga > 1:1412551‑M1/1‑14 (MQ=255) aGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga > 1:3022428‑M1/1‑14 (MQ=255) gggAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga > 1:4279911‑M1/1‑13 (MQ=255) gggAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga > 1:1914792‑M1/1‑13 (MQ=255) ggAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgaca < 1:4778681‑M1/50‑39 (MQ=255) ggAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga > 1:2586384‑M1/1‑12 (MQ=255) gagaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacag < 1:1954894‑M1/50‑40 (MQ=255) gagaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacag > 1:3312372‑M1/1‑11 (MQ=255) agaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagt < 1:4118009‑M1/50‑41 (MQ=255) agaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacag > 1:6172272‑M1/1‑10 (MQ=255) agaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacag > 1:5399795‑M1/1‑10 (MQ=255) aCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaa > 1:4808968‑M1/1‑8 (MQ=255) aCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaa > 1:4136971‑M1/1‑8 (MQ=255) cTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaac > 1:4695367‑M1/1‑7 (MQ=255) cTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaac < 1:4508187‑M1/50‑44 (MQ=255) tCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaact > 1:5390826‑M1/1‑6 (MQ=255) ccccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaact > 1:595660‑M1/1‑5 (MQ=255) ccccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaact > 1:4316371‑M1/1‑5 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactta > 1:1613074‑M1/1‑4 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactta > 1:5732636‑M1/1‑4 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactt < 1:2825869‑M1/49‑46 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactt < 1:2398744‑M1/49‑46 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaact < 1:4589215‑M1/48‑45 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaaagacagtaactt < 1:5072658‑M1/49‑46 (MQ=255) ccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttat > 1:5784289‑M1/1‑3 (MQ=255) ccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttat < 1:2320647‑M1/50‑48 (MQ=255) ccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttat > 1:4794078‑M1/1‑3 (MQ=255) cAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttatt < 1:5636150‑M1/50‑49 (MQ=255) cAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttatt < 1:5852952‑M1/50‑49 (MQ=255) acctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttattc > 1:533869‑M1/1‑1 (MQ=255) acctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttattc > 1:321202‑M1/1‑1 (MQ=255) acctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttattc < 1:5213900‑M1/50‑50 (MQ=255) acctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttattc < 1:3056348‑M1/50‑50 (MQ=255) acctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttattc < 1:5018327‑M1/50‑50 (MQ=255) acctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttattc < 1:817213‑M1/50‑50 (MQ=255) | AACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAA > NC_000913/2756109‑2756208 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |