New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 380111 | 0 (0.000) | 45 (0.620) +CGAGAT |
29/86 | 0.6 | 64.3% | coding (732/774 nt) | yaiO | outer membrane protein YaiO |
? | NC_000913 | 4070444 = | 57 (0.690) | intergenic (‑43/+71) | yihR/yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase |
AAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCCGTCAG > NC_000913/380063‑380155 | aaGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc < 1:3636941‑M1/50‑2 (MQ=255) aaGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc > 1:3661610‑M1/1‑49 (MQ=255) aaGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc < 1:1065828‑M1/50‑2 (MQ=255) aGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc > 1:972085‑M1/1‑48 (MQ=255) aGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc > 1:3892984‑M1/1‑48 (MQ=255) aGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc > 1:5915296‑M1/1‑48 (MQ=255) ggAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcga < 1:2238042‑M1/50‑4 (MQ=255) gAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc > 1:1481587‑M1/1‑46 (MQ=255) aaTCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc > 1:1446911‑M1/1‑45 (MQ=255) cAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatg > 1:4367023‑M1/1‑42 (MQ=255) aGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatgga > 1:3998225‑M1/1‑41 (MQ=255) aGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatgga < 1:3765605‑M1/50‑10 (MQ=255) aGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatgg < 1:774423‑M1/49‑9 (MQ=255) gAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggac < 1:5768051‑M1/50‑11 (MQ=255) gAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggac > 1:5738850‑M1/1‑40 (MQ=255) gAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggac > 1:4932085‑M1/1‑40 (MQ=255) aaTTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacg < 1:3861617‑M1/50‑12 (MQ=255) aTTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacgg > 1:2917291‑M1/1‑38 (MQ=255) ccAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcc < 1:6277405‑M1/49‑16 (MQ=255) ccAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcc < 1:5612757‑M1/49‑16 (MQ=255) aGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccct > 1:4585820‑M1/1‑32 (MQ=255) ggTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctc < 1:5138333‑M1/50‑20 (MQ=255) ggTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctc < 1:1097521‑M1/50‑20 (MQ=255) ggTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctc < 1:2007716‑M1/50‑20 (MQ=255) tCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgc < 1:1995932‑M1/50‑22 (MQ=255) aGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccc > 1:2343323‑M1/1‑27 (MQ=255) aGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccc > 1:3113795‑M1/1‑27 (MQ=255) aGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcc < 1:4519845‑M1/49‑23 (MQ=255) gACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccc > 1:1784070‑M1/1‑26 (MQ=255) aCGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccc > 1:6107493‑M1/1‑25 (MQ=255) cGGGCTGCAAGTTGCAGACCGTTAcgagatgggcggtcccctcgccccct < 1:1147286‑M1/50‑27 (MQ=255) cGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccct < 1:274034‑M1/50‑27 (MQ=255) gggCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccctt > 1:2715576‑M1/1‑23 (MQ=255) gggCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccctt > 1:5876866‑M1/1‑23 (MQ=255) gggCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccctt > 1:5576657‑M1/1‑23 (MQ=255) gggCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccctt < 1:698193‑M1/50‑28 (MQ=255) ggCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttg < 1:3354056‑M1/50‑29 (MQ=255) cTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggg < 1:3715667‑M1/50‑31 (MQ=255) cTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggg > 1:4264022‑M1/1‑20 (MQ=255) cTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggg > 1:2452859‑M1/1‑20 (MQ=255) tGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggg > 1:5732200‑M1/1‑19 (MQ=255) gCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggg > 1:3279642‑M1/1‑18 (MQ=255) cAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggggag < 1:1781445‑M1/50‑34 (MQ=255) aaGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttgggga > 1:5700694‑M1/1‑16 (MQ=255) aGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagag > 1:5430344‑M1/1‑15 (MQ=255) gTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagagg > 1:5539594‑M1/1‑14 (MQ=255) gCAGACCGTTAcgagatggacggtcccctcgcccccttggggagagggt < 1:3462134‑M1/49‑39 (MQ=255) gCAGACCGTTAcgagatggacggtcccctcgcccccttggggagagggt < 1:3681612‑M1/49‑39 (MQ=255) cAGACCGTTAcgagatggacggtcccctcgcccccttggggagagggtta < 1:761618‑M1/50‑41 (MQ=255) cAGACCGTTAcgagatggacggtcccctcgcccccttggggagagggt > 1:2355192‑M1/1‑10 (MQ=255) aGACCGTTAcgagatggacggtcccctcgcgcccttggggagagggttag < 1:5888949‑M1/50‑42 (MQ=255) gACCGTTAcgaggtggacggtcccctcgcccccttggggagagggttagg < 1:1807771‑M1/50‑43 (MQ=255) gACCGTTAcgagatggacggtcccctcgcccccttggggagagggttagg < 1:3714012‑M1/50‑43 (MQ=255) gTTAcgagatggacggtcccctcgcccccttggggagagggttagggt > 1:5894794‑M1/1‑4 (MQ=255) | AAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCCGTCAG > NC_000913/380063‑380155 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |