| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 1 (0.010) | 32 (0.390) | 22/96 | 2.1 | 98.5% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 0 (0.000) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
AAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCA > NC_000913/3888384‑3888474 | aaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCag < 1:3707926/50‑2 (MQ=255) tctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgactt > 1:4493296‑M1/1‑44 (MQ=255) tctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgactt > 1:538666‑M1/1‑44 (MQ=255) tctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgactt > 1:4855047‑M1/1‑44 (MQ=255) tGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttca > 1:3215640‑M1/1‑42 (MQ=255) tGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgactt < 1:5276437‑M1/48‑7 (MQ=255) aGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcacc < 1:3980679‑M1/50‑11 (MQ=255) aGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcacc < 1:2802856‑M1/50‑11 (MQ=255) aGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcac < 1:5144535‑M1/49‑10 (MQ=255) aGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcac < 1:4438928‑M1/49‑10 (MQ=255) aGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcac < 1:6021024‑M1/49‑10 (MQ=255) aGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttca < 1:2642385‑M1/48‑9 (MQ=255) gtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccag > 1:5070692‑M1/1‑37 (MQ=255) aataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtat > 1:1541704‑M1/1‑35 (MQ=255) aataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtat > 1:6284988‑M1/1‑35 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtatt > 1:5443886‑M1/1‑34 (MQ=255) taatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattc > 1:1390341‑M1/1‑33 (MQ=255) taatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattc > 1:4612308‑M1/1‑33 (MQ=255) atGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctc > 1:3399547‑M1/1‑31 (MQ=255) atGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattct < 1:4873928‑M1/49‑19 (MQ=255) tAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctgg > 1:4526682‑M1/1‑28 (MQ=255) ccTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggtta > 1:6357883‑M1/1‑25 (MQ=255) cTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttat > 1:4754394‑M1/1‑24 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt < 1:3030215‑M1/49‑29 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt < 1:5239942‑M1/49‑29 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatg < 1:2556130‑M1/48‑28 (MQ=255) tCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcagg < 1:3279115‑M1/50‑33 (MQ=255) gAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgc > 1:2366512‑M1/1‑12 (MQ=255) ggATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcct < 1:239083‑M1/50‑41 (MQ=255) aTAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgc < 1:2336481‑M1/50‑43 (MQ=255) aTAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgc < 1:853724‑M1/50‑43 (MQ=255) tAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcg < 1:3181115‑M1/50‑44 (MQ=255) tAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcg < 1:1036936‑M1/50‑44 (MQ=255) | AAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCA > NC_000913/3888384‑3888474 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |