| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 1 (0.010) | 32 (0.390) | 22/96 | 2.1 | 98.5% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 0 (0.000) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
TTTGCATGTTCATAGCAAGGACCTTTTTTATAAACAAAAAAACCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCAG > NC_000913/3906555‑3906648 | tctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACtt > 1:4493296‑M2/45‑50 (MQ=255)tctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACtt > 1:4855047‑M2/45‑50 (MQ=255)tctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACtt > 1:538666‑M2/45‑50 (MQ=255) tgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACtt < 1:5276437‑M2/6‑1 (MQ=255) tgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCa > 1:3215640‑M2/43‑50 (MQ=255) agtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCa < 1:2642385‑M2/8‑1 (MQ=255) agtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAcc < 1:3980679‑M2/10‑1 (MQ=255) agtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAcc < 1:2802856‑M2/10‑1 (MQ=255) agtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAc < 1:4438928‑M2/9‑1 (MQ=255) agtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAc < 1:5144535‑M2/9‑1 (MQ=255) agtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAc < 1:6021024‑M2/9‑1 (MQ=255) gtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAg > 1:5070692‑M2/38‑49 (MQ=255) aataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAt > 1:1541704‑M2/36‑50 (MQ=255) aataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAt > 1:6284988‑M2/36‑50 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAtt > 1:5443886‑M2/35‑50 (MQ=255) taatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtc > 1:4612308‑M2/34‑50 (MQ=255) taatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtc > 1:1390341‑M2/34‑50 (MQ=255) atgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtctc > 1:3399547‑M2/32‑50 (MQ=255) atgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtct < 1:4873928‑M2/18‑1 (MQ=255) tagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTgg > 1:4526682‑M2/29‑50 (MQ=255) cctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTa > 1:6357883‑M2/26‑50 (MQ=255) ctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTAt > 1:4754394‑M2/25‑50 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATg < 1:2556130‑M2/27‑1 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt < 1:5239942‑M2/28‑1 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt < 1:3030215‑M2/28‑1 (MQ=255) tcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAgg < 1:3279115‑M2/32‑1 (MQ=255) gaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGc > 1:2366512‑M2/13‑50 (MQ=255) ggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCt < 1:239083‑M2/40‑1 (MQ=255) ataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGc < 1:2336481‑M2/42‑1 (MQ=255) ataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGc < 1:853724‑M2/42‑1 (MQ=255) taagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCg < 1:3181115‑M2/43‑1 (MQ=255) taagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCg < 1:1036936‑M2/43‑1 (MQ=255) cGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCAg > 1:5546144/1‑50 (MQ=255) cGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCAg < 1:1834560/50‑1 (MQ=255) | TTTGCATGTTCATAGCAAGGACCTTTTTTATAAACAAAAAAACCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCAG > NC_000913/3906555‑3906648 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |