| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 508,873 | Δ40,744 bp | copA–[ylbE] | 37 genes copA, copA, copA, glsA, ybaT, cueR, ybbJ, qmcA, fetA, fetB, cnoX, ybbO, tesA, ybbA, ybbP, rhsD, ybbC, ylbH, ybbD, ylbI, ylbG, selU, allS, allA, allR, gcl, hyi, glxR, ybbW, allB, ybbY, glxK, allE, allC, allD, fdrA, [ylbE] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 508873 | 549616 | 40744 | 95 [0] | [0] 96 | copA–[ylbE] | copA,copA,copA,glsA,ybaT,cueR,ybbJ,qmcA,fetA,fetB,cnoX,ybbO,tesA,ybbA,ybbP,rhsD,ybbC,ylbH,ybbD,ylbI,ylbG,selU,allS,allA,allR,gcl,hyi,glxR,ybbW,allB,ybbY,glxK,allE,allC,allD,fdrA,[ylbE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 508872 | 0 (0.000) | 93 (1.120) | 56/98 | 0.0 | 100% | intergenic (+313/+3) | ybaQ/copA | putative DNA‑binding transcriptional regulator YbaQ/Cu(+) exporting P‑type ATPase |
| ? | NC_000913 | 549617 = | 0 (0.000) | intergenic (+1/‑10) | ylbE/ylbF | DUF1116 domain‑containing protein YlbE/DUF2877 domain‑containing protein YlbF | |||||
TTTGAACAGGCGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCAC > NC_000913/549569‑549666 | cgtcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtgg < 1:2531785‑M2/2‑1 (MQ=255)cgtcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtg > 1:3236446‑M2/49‑49 (MQ=255)cgtcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtg < 1:1262603‑M2/1‑1 (MQ=255) gtcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtgg > 1:4516799‑M2/48‑49 (MQ=255) tcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGaa > 1:5299503‑M2/47‑50 (MQ=255) tcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGaa < 1:6128400‑M2/4‑1 (MQ=255) gatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcg > 1:6173275‑M2/45‑50 (MQ=255) gatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcg < 1:4985339‑M2/6‑1 (MQ=255) gatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcg < 1:2086834‑M2/6‑1 (MQ=255) gatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAc < 1:1400839‑M2/5‑1 (MQ=255) gatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAc < 1:2753950‑M2/5‑1 (MQ=255) gatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAc < 1:4882807‑M2/5‑1 (MQ=255) gatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAc < 1:1033518‑M2/5‑1 (MQ=255) gccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcgcg > 1:404910‑M2/42‑49 (MQ=255) ccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACgcgc < 1:1464953‑M2/9‑1 (MQ=255) ccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACgcgc < 1:2245537‑M2/9‑1 (MQ=255) caaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCaa > 1:5375961‑M2/40‑50 (MQ=255) caaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCaa < 1:5365712‑M2/11‑1 (MQ=255) caaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCaa > 1:3629303‑M2/40‑50 (MQ=255) aaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAAt > 1:4173915‑M2/39‑50 (MQ=255) aaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAAt > 1:564899‑M2/39‑50 (MQ=255) aaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAAt > 1:6323607‑M2/39‑50 (MQ=255) aaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAAt > 1:5663541‑M2/39‑50 (MQ=255) aaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAAt > 1:2286271‑M2/39‑50 (MQ=255) aaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAAt < 1:5314816‑M2/12‑1 (MQ=255) aaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAAt < 1:3247713‑M2/12‑1 (MQ=255) aatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAAt > 1:1813419‑M2/38‑49 (MQ=255) aatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAAt > 1:3226260‑M2/38‑49 (MQ=255) atgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGa > 1:2234620‑M2/37‑50 (MQ=255) atgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGa < 1:5189305‑M2/14‑1 (MQ=255) tgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGAc < 1:3972431‑M2/15‑1 (MQ=255) tgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGAc < 1:2199142‑M2/15‑1 (MQ=255) cgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACg < 1:2075621‑M2/16‑1 (MQ=255) cgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGa > 1:3822276‑M2/34‑50 (MQ=255) gccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGat < 1:3204562‑M2/18‑1 (MQ=255) gccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGat > 1:2633117‑M2/33‑50 (MQ=255) ccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatc < 1:5804069‑M2/19‑1 (MQ=255) ccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatc < 1:203061‑M2/19‑1 (MQ=255) accctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcat > 1:5015256‑M2/30‑50 (MQ=255) accctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcat > 1:4399438‑M2/30‑50 (MQ=255) cctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcatc > 1:5290090‑M2/28‑49 (MQ=255) ctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatcca < 1:816022‑M2/24‑1 (MQ=255) ctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatcca < 1:5783717‑M2/24‑1 (MQ=255) aagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatccatc < 1:4259121‑M2/26‑1 (MQ=255) aagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATCatccatcc < 1:2482070‑M2/27‑1 (MQ=255) agcagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCct > 1:1924508‑M2/23‑50 (MQ=255) gcagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCctc < 1:1987043‑M2/29‑1 (MQ=255) cagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCctct > 1:406575‑M2/21‑50 (MQ=255) cagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCctct > 1:5715948‑M2/21‑50 (MQ=255) cagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCatct < 1:1594667‑M2/30‑1 (MQ=255) cgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCt > 1:6160131‑M2/18‑50 (MQ=255) cgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCt > 1:2226593‑M2/18‑50 (MQ=255) cgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCt > 1:5098548‑M2/18‑50 (MQ=255) gcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCtt > 1:2020821‑M2/17‑50 (MQ=255) gcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCtt < 1:1199490‑M2/34‑1 (MQ=255) catccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTg < 1:571634‑M2/35‑1 (MQ=255) catccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTg < 1:915437‑M2/35‑1 (MQ=255) catccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTg < 1:1433716‑M2/35‑1 (MQ=255) tccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGcc < 1:622047‑M2/37‑1 (MQ=255) tccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGcc < 1:1820882‑M2/37‑1 (MQ=255) ccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGc > 1:5626778‑M2/13‑48 (MQ=255) cgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCag < 1:3217993‑M2/39‑1 (MQ=255) cgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCag < 1:3112511‑M2/39‑1 (MQ=255) cgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCag > 1:2762102‑M2/12‑50 (MQ=255) cgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCag > 1:6344083‑M2/12‑50 (MQ=255) cgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCag > 1:2354203‑M2/12‑50 (MQ=255) cgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCa < 1:756220‑M2/38‑1 (MQ=255) cgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCa < 1:5396304‑M2/38‑1 (MQ=255) caatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagta < 1:5485632‑M2/41‑1 (MQ=255) aatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtag > 1:4005872‑M2/9‑50 (MQ=255) aatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtag < 1:75265‑M2/42‑1 (MQ=255) aatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtag > 1:3062015‑M2/9‑50 (MQ=255) atgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtagt < 1:1844806‑M2/43‑1 (MQ=255) atgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtagt < 1:466797‑M2/43‑1 (MQ=255) atgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtag > 1:160701‑M2/8‑49 (MQ=255) atgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtag > 1:6075350‑M2/8‑49 (MQ=255) tgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtag > 1:6157487‑M2/7‑48 (MQ=255) tgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAgtagta < 1:3886395‑M2/44‑1 (MQ=255) tgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAgtagta < 1:2537197‑M2/44‑1 (MQ=255) tgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAgtagta < 1:3360900‑M2/44‑1 (MQ=255) gatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGtagtag > 1:1694583‑M2/6‑50 (MQ=255) gatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGtagtag > 1:2819970‑M2/6‑50 (MQ=255) atgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGtagtag < 1:761411‑M2/45‑1 (MQ=255) atgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGtagtag < 1:3648875‑M2/45‑1 (MQ=255) atgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAgc > 1:4540895‑M2/5‑50 (MQ=255) atgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAgc < 1:2674988‑M2/46‑1 (MQ=255) atgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAgc < 1:2901419‑M2/46‑1 (MQ=255) atgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAgc < 1:581534‑M2/46‑1 (MQ=255) atgtGGAACGCGCAATGACGATCAGCCATCCTCTGCTTGCCAGTAGTAgc < 1:5814835‑M2/46‑1 (MQ=255) gtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAgcg > 1:4515582‑M2/3‑49 (MQ=255) tGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCa > 1:5437901‑M2/2‑50 (MQ=255) tGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCa > 1:1080513‑M2/2‑50 (MQ=255) tGGAACGCGCAAGGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCa < 1:2274308‑M2/49‑1 (MQ=255) ggAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCAc > 1:362264/1‑50 (MQ=255) ggAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCAc > 1:5913287/1‑50 (MQ=255) ggAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCAc > 1:1393424/1‑50 (MQ=255) | TTTGAACAGGCGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCAC > NC_000913/549569‑549666 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |