BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	687,860	Δ1,185 bp	IS5‑mediated	insH‑3	insH‑3

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	687860	689044	1185	106 [0]	[0] 105	insH‑3	insH‑3

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 687859	0 (0.000)	100 (1.230)	60/96	0.0	100%	noncoding (1187/1195 nt)	IS5	repeat region
*	?	NC_000913	689045 =	0 (0.000)	100 (1.230)	60/96	0.0	100%	noncoding (1/1195 nt)	IS5	repeat region

Only 100 of 106 total aligned reads displayed.

TTATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTC  >  NC_000913/687810‑687908

ttATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC                                                   >  1:871350‑M1/1‑50 (MQ=255)

   tCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCctt                                                <  1:3957885‑M1/50‑4 (MQ=255)

   tCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCctt                                                <  1:2823818‑M1/50‑4 (MQ=255)

   tCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCct                                                 <  1:2544239‑M1/49‑3 (MQ=255)

    cGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCct                                                 >  1:2141789‑M1/1‑46 (MQ=255)

     gTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttag                                              <  1:6161601‑M1/50‑6 (MQ=255)

     gTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttag                                              >  1:4986580‑M1/1‑45 (MQ=255)

      tCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttagg                                             >  1:3754953‑M1/1‑44 (MQ=255)

      tCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttagg                                             <  1:3024416‑M1/50‑7 (MQ=255)

         gCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaa                                          >  1:497291‑M1/1‑41 (MQ=255)

         gCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaa                                          >  1:4138722‑M1/1‑41 (MQ=255)

         gCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaa                                          >  1:2965499‑M1/1‑41 (MQ=255)

          cAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaac                                         <  1:3875138‑M1/50‑11 (MQ=255)

          cAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaa                                          >  1:1389923‑M1/1‑40 (MQ=255)

          cAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaa                                          >  1:2511643‑M1/1‑40 (MQ=255)

          cAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaa                                          <  1:3700668‑M1/49‑10 (MQ=255)

          cAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggta                                           <  1:2764073‑M1/48‑9 (MQ=255)

          cAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggta                                           <  1:499410‑M1/48‑9 (MQ=255)

           aaCTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaaca                                        <  1:6245998‑M1/50‑12 (MQ=255)

           aaCTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaaca                                        <  1:5461884‑M1/50‑12 (MQ=255)

           aaCTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaaca                                        >  1:3410210‑M1/1‑39 (MQ=255)

            aCTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacat                                       >  1:4244274‑M1/1‑38 (MQ=255)

              tttATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatt                                      >  1:6152256‑M1/1‑36 (MQ=255)

              tttATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatt                                      >  1:5425795‑M1/1‑36 (MQ=255)

               ttATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatt                                      >  1:2951314‑M1/1‑35 (MQ=255)

                tATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttag                                   >  1:6196879‑M1/1‑34 (MQ=255)

                tATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttag                                   >  1:4011047‑M1/1‑34 (MQ=255)

                tATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttag                                   >  1:779748‑M1/1‑34 (MQ=255)

                tATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttag                                   >  1:5936575‑M1/1‑34 (MQ=255)

                 aTTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagt                                  >  1:5504308‑M1/1‑33 (MQ=255)

                 aTTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttag                                   <  1:253450‑M1/49‑17 (MQ=255)

                 aTTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttag                                   <  1:2870466‑M1/49‑17 (MQ=255)

                  ttGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtt                                 <  1:4554407‑M1/50‑19 (MQ=255)

                  ttGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtt                                 >  1:619033‑M1/1‑32 (MQ=255)

                    gtgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttg                               >  1:2121645‑M1/1‑30 (MQ=255)

                    gtgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagttt                                <  1:5813193‑M1/49‑20 (MQ=255)

                     tgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttgg                              <  1:4829024‑M1/50‑22 (MQ=255)

                     tgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttgg                              >  1:2227362‑M1/1‑29 (MQ=255)

                     tgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttgg                              >  1:5211517‑M1/1‑29 (MQ=255)

                     tgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttg                               <  1:4451118‑M1/49‑21 (MQ=255)

                     tgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttg                               <  1:3286110‑M1/49‑21 (MQ=255)

                     tgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttg                               <  1:1685415‑M1/49‑21 (MQ=255)

                       cAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggct                            <  1:3121635‑M1/50‑24 (MQ=255)

                       cAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggct                            <  1:6357263‑M1/50‑24 (MQ=255)

                       cAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggc                             >  1:6004370‑M1/1‑27 (MQ=255)

                       cAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggc                             >  1:1485182‑M1/1‑27 (MQ=255)

                        aGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggcta                           <  1:2772289‑M1/50‑25 (MQ=255)

                        aGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggct                            >  1:1700282‑M1/1‑26 (MQ=255)

                         gtgtTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggcta                           >  1:5204645‑M1/1‑25 (MQ=255)

                          tgttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaa                         >  1:5271606‑M1/1‑24 (MQ=255)

                          tgttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaa                         >  1:1015603‑M1/1‑24 (MQ=255)

                            ttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatg                       <  1:5238356‑M1/50‑29 (MQ=255)

                            ttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatg                       <  1:2586239‑M1/50‑29 (MQ=255)

                            ttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatg                       <  1:2594353‑M1/50‑29 (MQ=255)

                            ttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatg                       >  1:4886008‑M1/1‑22 (MQ=255)

                             tgtgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatg                       >  1:1411699‑M1/1‑21 (MQ=255)

                              gtgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgt                      <  1:47877‑M1/49‑30 (MQ=255)

                              gtgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgt                      <  1:1100403‑M1/49‑30 (MQ=255)

                              gtgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgt                      <  1:445281‑M1/49‑30 (MQ=255)

                               tgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaa                    <  1:5203950‑M1/50‑32 (MQ=255)

                               tgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaa                    <  1:4844640‑M1/50‑32 (MQ=255)

                               tgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgta                     <  1:6239927‑M1/49‑31 (MQ=255)

                               tgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgta                     <  1:5735961‑M1/49‑31 (MQ=255)

                               tgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgta                     <  1:541317‑M1/49‑31 (MQ=255)

                               tgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgta                     <  1:3482640‑M1/49‑31 (MQ=255)

                                gCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgta                     >  1:2283527‑M1/1‑18 (MQ=255)

                                 ccTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaa                   <  1:623659‑M1/49‑33 (MQ=255)

                                 ccTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaa                   <  1:613649‑M1/49‑33 (MQ=255)

                                 ccTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaa                   <  1:4506964‑M1/49‑33 (MQ=255)

                                  cTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaaga                 <  1:1176566‑M1/50‑35 (MQ=255)

                                   tGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaaga                 >  1:657362‑M1/1‑15 (MQ=255)

                                   tGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaaga                 >  1:3175367‑M1/1‑15 (MQ=255)

                                    gTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagata               >  1:2345369‑M1/1‑14 (MQ=255)

                                    gTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagata               >  1:1145640‑M1/1‑14 (MQ=255)

                                     ttAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatat              <  1:6292123‑M1/50‑38 (MQ=255)

                                     ttAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatat              >  1:189353‑M1/1‑13 (MQ=255)

                                     ttAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatat              >  1:6371369‑M1/1‑13 (MQ=255)

                                     ttAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatat              >  1:6386288‑M1/1‑13 (MQ=255)

                                     ttAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagata               <  1:6222264‑M1/49‑37 (MQ=255)

                                     ttAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagat                <  1:5171380‑M1/48‑36 (MQ=255)

                                      tAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatatt             >  1:3412523‑M1/1‑12 (MQ=255)

                                      tAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatatt             >  1:6385316‑M1/1‑12 (MQ=255)

                                       aGGGAAGGTGCcttaggtaacatttagtttggctacatgtaaagatattg            >  1:3370995‑M1/1‑11 (MQ=255)

                                       aGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagctattg            >  1:3440695‑M1/1‑11 (MQ=255)

                                       aGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattg            >  1:1920661‑M1/1‑11 (MQ=255)

                                       aGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattg            >  1:2701472‑M1/1‑11 (MQ=255)

                                        gggAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgc           <  1:4100109‑M1/50‑41 (MQ=255)

                                        gggAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgc           <  1:2230470‑M1/50‑41 (MQ=255)

                                        gggAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattg            <  1:3179796‑M1/49‑40 (MQ=255)

                                         ggAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgct          <  1:783707‑M1/50‑42 (MQ=255)

                                          gAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctg         >  1:1282568‑M1/1‑8 (MQ=255)

                                           aaGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgt        <  1:1327475‑M1/50‑44 (MQ=255)

                                            aGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgtt       >  1:1383338‑M1/1‑6 (MQ=255)

                                              gTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgtttt     <  1:3012574‑M1/50‑47 (MQ=255)

                                                gCcttaggtaacatttagtttggctaaatgtaaagatattgctgttttat   >  1:3691501‑M1/1‑2 (MQ=255)

                                                 ccttaggtaacatttagtttggctaaatgtaaagatattgctgttttatt  <  1:807496‑M1/50‑50 (MQ=255)

                                                 ccttaggtaacatttagtttggctaaatgtaaagatattgctgttttat   <  1:3806931‑M1/49‑49 (MQ=255)

                                                 ccttaggtaacatttagtttggctaaatgtaaagatattgctgttttat   <  1:2684638‑M1/49‑49 (MQ=255)

                                                 ccttaggtaacatttagtttggctaaatgtaaagatattgctgttttat   <  1:1591358‑M1/49‑49 (MQ=255)

                                                 ccttaggtaacatttagtttggctaaatgtaaagatattgctgttttat   <  1:3014097‑M1/49‑49 (MQ=255)

TTATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTC  >  NC_000913/687810‑687908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`