| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 819,776 | Δ62,977 bp | ybhL–deoR | 57 genes ybhL, ybhM, ybhN, clsB, ybhP, ybhQ, ybhR, ybhS, ybhF, ybhG, cecR, rhlE, ybiA, dinG, ybiB, hcxB, ybiJ, ybiI, ybiX, fiu, mcbA, rlmF, ybiO, glnQ, glnP, glnH, dps, rhtA, yliM, ompX, opgE, rybA, mntS, mntR, ybiR, ldtB, ybiT, ybiU, ybiV, ybiW, ybiY, fsaA, moeB, moeA, iaaA, gsiA, gsiB, gsiC, gsiD, pdeI, dgcI, rimO, bssR, yliI, gstB, dacC, deoR |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 819776 | 882752 | 62977 | 114 [0] | [0] 115 | ybhL–deoR | ybhL,ybhM,ybhN,clsB,ybhP,ybhQ,ybhR,ybhS,ybhF,ybhG,cecR,rhlE,ybiA,dinG,ybiB,hcxB,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,glnH,dps,rhtA,yliM,ompX,opgE,rybA,mntS,mntR,ybiR,ldtB,ybiT,ybiU,ybiV,ybiW,ybiY,fsaA,moeB,moeA,iaaA,gsiA,gsiB,gsiC,gsiD,pdeI,dgcI,rimO,bssR,yliI,gstB,dacC,deoR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 819775 | NA (NA) | 114 (1.370) | 70/98 | 0.0 | 100% | noncoding (17/27 nt) | REPt74 | REPt74 |
| ? | NC_000913 | 882753 = | 0 (0.000) | intergenic (‑19/+39) | deoR/ybjG | DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase | |||||
Only 100 of 114 total aligned reads displayed.
CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGAT > NC_000913/819727‑819823 | cAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTt > 1:5544752‑M1/1‑49 (MQ=255)cAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTt < 1:2001571‑M1/50‑2 (MQ=255) aGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTtt > 1:5822792‑M1/1‑48 (MQ=255) ggcggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttg < 1:4927577‑M1/50‑4 (MQ=255) gcggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttga < 1:4123977‑M1/50‑5 (MQ=255) cggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaa < 1:2650594‑M1/50‑6 (MQ=255) cggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaa < 1:3505189‑M1/50‑6 (MQ=255) ggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaag < 1:4575863‑M1/50‑7 (MQ=255) ggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaag > 1:5281589‑M1/1‑44 (MQ=255) gcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagc < 1:648060‑M1/50‑8 (MQ=255) gcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagc < 1:5176519‑M1/50‑8 (MQ=255) aaaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcga < 1:4467206‑M1/50‑10 (MQ=255) aaaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcga < 1:918040‑M1/50‑10 (MQ=255) aaaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcga < 1:1319964‑M1/50‑10 (MQ=255) aaaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagc > 1:5384814‑M1/1‑41 (MQ=255) aaaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagc > 1:3436426‑M1/1‑41 (MQ=255) aaaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagc > 1:1044626‑M1/1‑41 (MQ=255) aaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgag > 1:3055361‑M1/1‑40 (MQ=255) aaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagc > 1:3568899‑M1/1‑39 (MQ=255) aCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagcc < 1:5008588‑M1/50‑13 (MQ=255) aCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagcc < 1:3535928‑M1/50‑13 (MQ=255) aCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagcc < 1:3286600‑M1/50‑13 (MQ=255) cGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccg < 1:3435949‑M1/50‑14 (MQ=255) cGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccg > 1:5082286‑M1/1‑37 (MQ=255) gCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgc > 1:50948‑M1/1‑36 (MQ=255) gCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgc < 1:4679967‑M1/50‑15 (MQ=255) cTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct < 1:3599756‑M1/50‑16 (MQ=255) cTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct > 1:5451820‑M1/1‑35 (MQ=255) cTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct > 1:2074157‑M1/1‑35 (MQ=255) cTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct > 1:6017496‑M1/1‑35 (MQ=255) tGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct > 1:1311829‑M1/1‑34 (MQ=255) tGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct > 1:4761124‑M1/1‑34 (MQ=255) ggTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctc > 1:623194‑M1/1‑33 (MQ=255) gTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaa > 1:2692713‑M1/1‑32 (MQ=255) gTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaa < 1:1629041‑M1/50‑19 (MQ=255) tAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaat < 1:1070553‑M1/50‑20 (MQ=255) aGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaata > 1:4455362‑M1/1‑30 (MQ=255) gTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatac > 1:225982‑M1/1‑29 (MQ=255) gTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatac < 1:1155668‑M1/50‑22 (MQ=255) gTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatac > 1:479821‑M1/1‑29 (MQ=255) ttttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatact < 1:1732203‑M1/50‑23 (MQ=255) tttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatacta > 1:4469115‑M1/1‑27 (MQ=255) tttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatacta > 1:6008321‑M1/1‑27 (MQ=255) ttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatacta < 1:4384919‑M1/49‑24 (MQ=255) ttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacac > 1:2121592‑M1/1‑24 (MQ=255) ttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacac > 1:5675128‑M1/1‑24 (MQ=255) tGTTAGCCGGGTAAGGCACCGCTttgaagcgagccgctcaatactacac < 1:3692545‑M1/49‑27 (MQ=255) tGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacact > 1:4110888‑M1/1‑23 (MQ=255) tGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacac < 1:2715632‑M1/49‑27 (MQ=255) gTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactt > 1:5694090‑M1/1‑22 (MQ=255) gTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacact < 1:6408968‑M1/49‑28 (MQ=255) gTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacact < 1:2220044‑M1/49‑28 (MQ=255) ttAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactt < 1:4396391‑M1/49‑29 (MQ=255) ttAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactt < 1:4319562‑M1/49‑29 (MQ=255) tAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttt > 1:300646‑M1/1‑20 (MQ=255) tAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttt > 1:4285433‑M1/1‑20 (MQ=255) aGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttt > 1:4935565‑M1/1‑19 (MQ=255) gCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttt > 1:5907373‑M1/1‑18 (MQ=255) ccGGATAAGGCACCGCTttgaatcgagccgctcaatactacactttttag > 1:3976958‑M1/1‑17 (MQ=255) ccGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag > 1:6264416‑M1/1‑17 (MQ=255) ccGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag < 1:4285083‑M1/50‑34 (MQ=255) ccGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag < 1:1031840‑M1/50‑34 (MQ=255) cGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttttagc < 1:3560139‑M1/50‑35 (MQ=255) cGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttttagc < 1:3293008‑M1/50‑35 (MQ=255) cGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttttagc < 1:682779‑M1/50‑35 (MQ=255) cGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag > 1:5918680‑M1/1‑16 (MQ=255) cGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag > 1:4361868‑M1/1‑16 (MQ=255) cGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag > 1:6232746‑M1/1‑16 (MQ=255) ggATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag > 1:5989859‑M1/1‑15 (MQ=255) aTAAGGCACCGCTttgaagcgagccgctcaatactacactttttagcaga < 1:3162800‑M1/50‑38 (MQ=255) aTAAGGCACCGCTttgaagcgagccgctcaatactacactttttagcaga < 1:1876917‑M1/50‑38 (MQ=255) aTAAGGCACCGCTttgaagcgagccgctcaatactacactttttagcaga < 1:3065766‑M1/50‑38 (MQ=255) tAAGGCACCGCTttgaagcgagccgctcaatactacactttttagcagag < 1:5922172‑M1/50‑39 (MQ=255) tAAGGCACCGCTttgaagcgagccgctcaatactacactttttagca > 1:865792‑M1/1‑12 (MQ=255) aaGGCACCGCTttgaagcgagccgctcaatactacactttttcgca > 1:778051‑M1/1‑11 (MQ=255) aaGGCACCGCTttgaagcgagccgctcaatactacactttttagca > 1:494267‑M1/1‑11 (MQ=255) aGGCACCGCTttgaagcgagccgctcaatactacactttttagcagagat < 1:4210877‑M1/50‑41 (MQ=255) aGGCACCGCTttgaagcgagccgctcaatactacactttttagcagagat < 1:5327258‑M1/50‑41 (MQ=255) aGGCACCGCTttgaagcgagccgctcaatactacactttttagcagagat < 1:3122243‑M1/50‑41 (MQ=255) aGGCACCGCTttgaagcgagccgctcaatactacactttttagcagaga < 1:5392173‑M1/49‑40 (MQ=255) aGGCACCGCTttgaagcgagccgctcaatactacactttttagcagaga < 1:4189921‑M1/49‑40 (MQ=255) aGGCACCGCTttgaagcgagccgctcaatactacactttttagca > 1:5726750‑M1/1‑10 (MQ=255) aGGCACCGCTttgaagcgagccgctcaatactacactttttagca > 1:929113‑M1/1‑10 (MQ=255) ggCACCGCTttgaagcgagccgctcaatactacactttttagcagagatc < 1:5505682‑M1/50‑42 (MQ=255) ggCACCGCTttgaagcgagccgctcaatactacactttttagcagagatc < 1:350879‑M1/50‑42 (MQ=255) gCACCGCTttgaagcgagccgctcaatactacactttttagcagagatca < 1:3105516‑M1/50‑43 (MQ=255) cACCGCTttgaagcgagccgctcaatactacactttttagcagagatcag < 1:5862156‑M1/50‑44 (MQ=255) aCCGCTttgaagcgagccgctcaatactacgctttttagcagagatcagt < 1:2204460‑M1/50‑45 (MQ=255) aCCGCTttgaagcgagccgctcaatactacactttttagcagagatcagt > 1:5299626‑M1/1‑6 (MQ=255) aCCGCTttgaagcgagccgctcaatactacactttttagcagagatcagt < 1:1532895‑M1/50‑45 (MQ=255) ccGCTttgaagcgagccgctcaatactacactttttagcagagatcagtc < 1:23592‑M1/50‑46 (MQ=255) ccGCTttgaagcgagccgctcaatactacactttttagcagagatcagtc < 1:2395500‑M1/50‑46 (MQ=255) ccGCTttgaagcgagccgctcaatactacactttttagcagagatcagt > 1:1740971‑M1/1‑5 (MQ=255) cGCTttgaagcgagccgctcaatactacactttttagcagagatcagtca < 1:517579‑M1/50‑47 (MQ=255) cGCTttgaagcgagccgctcaatactacactttttagcagagatcagtca < 1:3370784‑M1/50‑47 (MQ=255) cGCTttgaagcgagccgctcaatactacactttttagcagagatcagtca < 1:4994643‑M1/50‑47 (MQ=255) gCTttgaagcgagccgctcaatactacactttttagcagagatcagtcac > 1:1934101‑M1/1‑3 (MQ=255) gCTttgaagcgagccgctcaatactacactttttagcagagatcagtcac > 1:1307383‑M1/1‑3 (MQ=255) cTttgaagcgagccgctcaatactacactttttagcagagatcagtcacg > 1:1391130‑M1/1‑2 (MQ=255) tttgaagcgagccgctcaatactacactttttagcagagatcagtcacg > 1:4327768‑M1/1‑1 (MQ=255) | CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGAT > NC_000913/819727‑819823 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |