| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 819,776 | Δ62,977 bp | ybhL–deoR | 57 genes ybhL, ybhM, ybhN, clsB, ybhP, ybhQ, ybhR, ybhS, ybhF, ybhG, cecR, rhlE, ybiA, dinG, ybiB, hcxB, ybiJ, ybiI, ybiX, fiu, mcbA, rlmF, ybiO, glnQ, glnP, glnH, dps, rhtA, yliM, ompX, opgE, rybA, mntS, mntR, ybiR, ldtB, ybiT, ybiU, ybiV, ybiW, ybiY, fsaA, moeB, moeA, iaaA, gsiA, gsiB, gsiC, gsiD, pdeI, dgcI, rimO, bssR, yliI, gstB, dacC, deoR |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 819776 | 882752 | 62977 | 114 [0] | [0] 115 | ybhL–deoR | ybhL,ybhM,ybhN,clsB,ybhP,ybhQ,ybhR,ybhS,ybhF,ybhG,cecR,rhlE,ybiA,dinG,ybiB,hcxB,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,glnH,dps,rhtA,yliM,ompX,opgE,rybA,mntS,mntR,ybiR,ldtB,ybiT,ybiU,ybiV,ybiW,ybiY,fsaA,moeB,moeA,iaaA,gsiA,gsiB,gsiC,gsiD,pdeI,dgcI,rimO,bssR,yliI,gstB,dacC,deoR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 819775 | NA (NA) | 114 (1.370) | 70/98 | 0.0 | 100% | noncoding (17/27 nt) | REPt74 | REPt74 |
| ? | NC_000913 | 882753 = | 0 (0.000) | intergenic (‑19/+39) | deoR/ybjG | DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase | |||||
Only 100 of 115 total aligned reads displayed.
GCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCA > NC_000913/882704‑882802 | caggcggcaaaacgctggtagttttttgttagccggataaggcaccgctt > 1:5544752‑M2/50‑50 (MQ=255) aggcggcaaaacgctggtagttttttgttagccggataaggcaccgcttt > 1:5822792‑M2/49‑50 (MQ=255) ggcggcaaaacgctggtagttttttgttagccggataaggcaccgctTTg < 1:4927577‑M2/3‑1 (MQ=255) gcggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGa < 1:4123977‑M2/4‑1 (MQ=255) cggcaaaacgctggtagttttttgttagccggataaggcaccgctTTg > 1:146481‑M2/46‑48 (MQ=255) cggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGaa < 1:2650594‑M2/5‑1 (MQ=255) cggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGaa < 1:3505189‑M2/5‑1 (MQ=255) ggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGAAg > 1:5281589‑M2/45‑50 (MQ=255) ggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGAAg < 1:4575863‑M2/6‑1 (MQ=255) gcaaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc < 1:5176519‑M2/7‑1 (MQ=255) gcaaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc < 1:648060‑M2/7‑1 (MQ=255) aaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc > 1:1044626‑M2/42‑48 (MQ=255) aaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc > 1:3436426‑M2/42‑48 (MQ=255) aaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc > 1:5384814‑M2/42‑48 (MQ=255) aaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGa < 1:1319964‑M2/9‑1 (MQ=255) aaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGa < 1:918040‑M2/9‑1 (MQ=255) aaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGa < 1:4467206‑M2/9‑1 (MQ=255) aacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGc > 1:3568899‑M2/40‑50 (MQ=255) acgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGcc > 1:3700732‑M2/39‑50 (MQ=255) acgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGcc < 1:3535928‑M2/12‑1 (MQ=255) acgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGcc < 1:3286600‑M2/12‑1 (MQ=255) cgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCg < 1:3435949‑M2/13‑1 (MQ=255) cgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCg > 1:5082286‑M2/38‑50 (MQ=255) gctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGc > 1:50948‑M2/37‑50 (MQ=255) gctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGc > 1:3112580‑M2/37‑50 (MQ=255) ctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt > 1:2074157‑M2/36‑50 (MQ=255) ctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt > 1:6017496‑M2/36‑50 (MQ=255) ctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt < 1:3599756‑M2/15‑1 (MQ=255) ctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt > 1:5451820‑M2/36‑50 (MQ=255) tggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt > 1:1311829‑M2/35‑49 (MQ=255) tggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt > 1:4761124‑M2/35‑49 (MQ=255) ggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTc > 1:623194‑M2/34‑49 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCaa > 1:2692713‑M2/33‑50 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCaa < 1:1629041‑M2/18‑1 (MQ=255) tagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAt < 1:1070553‑M2/19‑1 (MQ=255) agttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAta > 1:4455362‑M2/31‑50 (MQ=255) gttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtac > 1:479821‑M2/30‑50 (MQ=255) gttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtac > 1:225982‑M2/30‑50 (MQ=255) gttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtac < 1:1155668‑M2/21‑1 (MQ=255) ttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtact < 1:1732203‑M2/22‑1 (MQ=255) tttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtacta > 1:6008321‑M2/28‑50 (MQ=255) tttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtacta > 1:4469115‑M2/28‑50 (MQ=255) ttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtacta > 1:5920017‑M2/27‑49 (MQ=255) ttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTacac > 1:2121592‑M2/25‑50 (MQ=255) tgttagccgggtaaggcaccgctTTGAAGCGAGCCGCTCAATACTacac < 1:3692545‑M2/26‑1 (MQ=255) tgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTacac < 1:2715632‑M2/26‑1 (MQ=255) tgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTacac < 1:2628704‑M2/26‑1 (MQ=255) tgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACt > 1:4110888‑M2/24‑50 (MQ=255) gttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtt > 1:5694090‑M2/23‑50 (MQ=255) gttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACt < 1:2220044‑M2/27‑1 (MQ=255) ttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACttt > 1:4294098‑M2/22‑50 (MQ=255) ttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACttt < 1:3453927‑M2/29‑1 (MQ=255) ttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtt < 1:4319562‑M2/28‑1 (MQ=255) ttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtt < 1:4396391‑M2/28‑1 (MQ=255) tagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt > 1:300646‑M2/21‑50 (MQ=255) tagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt > 1:4285433‑M2/21‑50 (MQ=255) agccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt > 1:4935565‑M2/20‑49 (MQ=255) gccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACttttt < 1:4956516‑M2/31‑1 (MQ=255) gccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt > 1:5907373‑M2/19‑48 (MQ=255) ccggataaggcaccgctTTGAATCGAGCCGCTCAATACTACACTTTTTAg > 1:3976958‑M2/18‑50 (MQ=255) ccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 1:6264416‑M2/18‑50 (MQ=255) ccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg < 1:5297716‑M2/33‑1 (MQ=255) ccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg < 1:1031840‑M2/33‑1 (MQ=255) ccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg < 1:4285083‑M2/33‑1 (MQ=255) cggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 1:6232746‑M2/17‑49 (MQ=255) cggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 1:4361868‑M2/17‑49 (MQ=255) cggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 1:5918680‑M2/17‑49 (MQ=255) cggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGc < 1:682779‑M2/34‑1 (MQ=255) cggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGc < 1:3293008‑M2/34‑1 (MQ=255) ggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 1:5989859‑M2/16‑48 (MQ=255) gataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCag < 1:4469764‑M2/36‑1 (MQ=255) ataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCaga < 1:3162800‑M2/37‑1 (MQ=255) ataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCaga < 1:1876917‑M2/37‑1 (MQ=255) ataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCaga < 1:3065766‑M2/37‑1 (MQ=255) ataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCaga < 1:2003933‑M2/37‑1 (MQ=255) taaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:865792‑M2/13‑47 (MQ=255) aaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTCGCa > 1:778051‑M2/12‑46 (MQ=255) aaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:494267‑M2/12‑46 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:5726750‑M2/11‑45 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:929113‑M2/11‑45 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAgaga < 1:5392173‑M2/39‑1 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAt < 1:4210877‑M2/40‑1 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAt < 1:3122243‑M2/40‑1 (MQ=255) ggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATc < 1:5505682‑M2/41‑1 (MQ=255) ggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATc < 1:350879‑M2/41‑1 (MQ=255) gcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCa < 1:559345‑M2/42‑1 (MQ=255) gcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCa < 1:3105516‑M2/42‑1 (MQ=255) caccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAg < 1:5862156‑M2/43‑1 (MQ=255) accgctTTGAAGCGAGCCGCTCAATACTACGCTTTTTAGCAGAGATCAGt < 1:2204460‑M2/44‑1 (MQ=255) accgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGt > 1:5299626‑M2/7‑50 (MQ=255) accgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGt < 1:1532895‑M2/44‑1 (MQ=255) ccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGt > 1:1740971‑M2/6‑49 (MQ=255) ccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTc < 1:2395500‑M2/45‑1 (MQ=255) cgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCa < 1:517579‑M2/46‑1 (MQ=255) cgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCa < 1:4994643‑M2/46‑1 (MQ=255) gctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAc > 1:1934101‑M2/4‑50 (MQ=255) gctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAc > 1:1307383‑M2/4‑50 (MQ=255) ctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACg > 1:636643‑M2/3‑50 (MQ=255) tTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACg > 1:4327768‑M2/2‑49 (MQ=255) ttGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCa > 1:2646588/1‑50 (MQ=255) | GCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCA > NC_000913/882704‑882802 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |