| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 380111 | 0 (0.000) | 38 (0.600) +CGAGAT |
25/86 | 0.6 | 58.7% | coding (732/774 nt) | yaiO | outer membrane protein YaiO |
| ? | NC_000913 | 4070444 = | 61 (0.840) | intergenic (‑43/+71) | yihR/yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase | |||||
AGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/380064‑380111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAG > NC_000913/4070444‑4070482 |||||| AGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAC > 1:914907/1‑49AGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAC > 1:2306419/1‑49 GAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAC > 1:3710784/1‑47 GAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAC > 1:3084726/1‑47 AATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGA < 1:2858639/50‑1 AATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAC > 1:1131895/1‑46 TCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATG < 1:742434/50‑1 AGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGA < 1:2278166/50‑1 AGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGA < 1:2498214/50‑1 AGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGG < 1:5237534/49‑1 GAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGAC < 1:4571882/50‑1 GAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGAC > 1:1724603/1‑50 AATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACG > 1:5037066/1‑50 TTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGT > 1:1509447/1‑50 TTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTC > 1:5264778/1‑50 AGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCT > 1:1953615/1‑50 AGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCT > 1:2070707/1‑50 AGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCT > 1:4837674/1‑50 AGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCT > 1:2973251/1‑50 TCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGCCGGTCCCCTCGC > 1:2976270/1‑50 TCAGACGGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGC > 1:344132/1‑50 GGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTT < 1:25771/50‑1 GGGCTGCAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTT < 1:5322702/50‑1 CAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGG < 1:4307872/48‑1 CAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGG > 1:5505688/1‑47 CAAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGG > 1:3993109/1‑47 AAGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGA > 1:4662005/1‑48 AGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAG > 1:3046267/1‑50 AGTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAG < 1:5475860/50‑1 GTTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGG > 1:3172422/1‑50 TTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGG < 1:4603521/50‑1 TTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGG < 1:1061763/50‑1 TTGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGG < 1:4931723/50‑1 TGCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGT > 1:829751/1‑50 GCAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGT > 1:3905649/1‑49 CAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTA < 1:1767362/50‑1 CAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTT < 1:178277/49‑1 CAGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGT > 1:927468/1‑48 AGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAG < 1:4161290/50‑1 AGACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAG > 1:3693795/1‑50 GACCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGG > 1:1319448/1‑50 CCGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGt < 1:462770/50‑2 CGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGtg < 1:3974927/50‑3 CGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGtg < 1:1729925/50‑3 |||||| AGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/380064‑380111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAG > NC_000913/4070444‑4070482 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |