New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 380111	0 (0.000)	38 (0.600) +CGAGAT	25/86	0.6	58.7%	coding (732/774 nt)	yaiO	outer membrane protein YaiO
	?	NC_000913	4070444 =	61 (0.840)					intergenic (‑43/+71)	yihR/yihS	putative aldose 1‑epimerase YihR/sulfoquinovose isomerase

GAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCCGTCAGC  >  NC_000913/380062‑380156                                                  |                                              gAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTa                                               <  1:511334/50‑1 (MQ=255) gAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTa                                               <  1:2924284/50‑1 (MQ=255)   aGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc                                              >  1:914907‑M1/1‑48 (MQ=255)   aGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc                                              >  1:2306419‑M1/1‑48 (MQ=255)     gAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc                                              >  1:3710784‑M1/1‑46 (MQ=255)     gAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc                                              >  1:3084726‑M1/1‑46 (MQ=255)      aaTCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgaga                                          <  1:2858639‑M1/50‑6 (MQ=255)      aaTCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc                                              >  1:1131895‑M1/1‑45 (MQ=255)        tCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatg                                        <  1:742434‑M1/50‑8 (MQ=255)          aGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatgga                                      <  1:2278166‑M1/50‑10 (MQ=255)          aGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatgga                                      <  1:2498214‑M1/50‑10 (MQ=255)          aGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatgg                                       <  1:5237534‑M1/49‑9 (MQ=255)           gAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggac                                     >  1:1724603‑M1/1‑40 (MQ=255)           gAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggac                                     <  1:4571882‑M1/50‑11 (MQ=255)            aaTTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacg                                    >  1:5037066‑M1/1‑39 (MQ=255)              tttCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggt                                  >  1:1509447‑M1/1‑37 (MQ=255)               ttCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtc                                 >  1:5264778‑M1/1‑36 (MQ=255)                   aGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccct                             >  1:2070707‑M1/1‑32 (MQ=255)                   aGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccct                             >  1:1953615‑M1/1‑32 (MQ=255)                   aGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccct                             >  1:2973251‑M1/1‑32 (MQ=255)                   aGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccct                             >  1:4837674‑M1/1‑32 (MQ=255)                      tCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggccggtcccctcgc                          >  1:2976270‑M1/1‑29 (MQ=255)                      tCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgc                          >  1:344132‑M1/1‑29 (MQ=255)                            gggCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccctt                    <  1:5322702‑M1/50‑28 (MQ=255)                            gggCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccctt                    <  1:25771‑M1/50‑28 (MQ=255)                                  cAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttgggg                <  1:4307872‑M1/48‑32 (MQ=255)                                  cAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggg                 >  1:3993109‑M1/1‑17 (MQ=255)                                  cAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggg                 >  1:5505688‑M1/1‑17 (MQ=255)                                   aaGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttgggga               >  1:4662005‑M1/1‑16 (MQ=255)                                    aGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagag            >  1:3046267‑M1/1‑15 (MQ=255)                                    aGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagag            <  1:5475860‑M1/50‑36 (MQ=255)                                     gTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagagg           >  1:3172422‑M1/1‑14 (MQ=255)                                      ttGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagaggg          <  1:1061763‑M1/50‑38 (MQ=255)                                      ttGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagaggg          <  1:4603521‑M1/50‑38 (MQ=255)                                      ttGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagaggg          <  1:4931723‑M1/50‑38 (MQ=255)                                       tGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagagggt         >  1:829751‑M1/1‑12 (MQ=255)                                        gCAGACCGTTAcgagatggacggtcccctcgcccccttggggagagggt         >  1:3905649‑M1/1‑11 (MQ=255)                                         cAGACCGTTAcgagatggacggtcccctcgcccccttggggagagggtta       <  1:1767362‑M1/50‑41 (MQ=255)                                         cAGACCGTTAcgagatggacggtcccctcgcccccttggggagagggtt        <  1:178277‑M1/49‑40 (MQ=255)                                         cAGACCGTTAcgagatggacggtcccctcgcccccttggggagagggt         >  1:927468‑M1/1‑10 (MQ=255)                                          aGACCGTTAcgagatggacggtcccctcgcccccttggggagagggttag      <  1:4161290‑M1/50‑42 (MQ=255)                                          aGACCGTTAcgagatggacggtcccctcgcccccttggggagagggttag      >  1:3693795‑M1/1‑9 (MQ=255)                                           gACCGTTAcgagatggacggtcccctcgcccccttggggagagggttagg     >  1:1319448‑M1/1‑8 (MQ=255)                                             ccGTTAcgagatggacggtcccctcgcccccttggggagagggttagggt   <  1:462770‑M1/50‑45 (MQ=255)                                              cGTTAcgagatggacggtcccctcgcccccttggggagagggttagggtg  <  1:3974927‑M1/50‑46 (MQ=255)                                              cGTTAcgagatggacggtcccctcgcccccttggggagagggttagggtg  <  1:1729925‑M1/50‑46 (MQ=255)                                                  |                                              GAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCCGTCAGC  >  NC_000913/380062‑380156

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.