Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 508,873 | Δ40,744 bp | copA–[ylbE] | 37 genes copA, copA, copA, glsA, ybaT, cueR, ybbJ, qmcA, fetA, fetB, cnoX, ybbO, tesA, ybbA, ybbP, rhsD, ybbC, ylbH, ybbD, ylbI, ylbG, selU, allS, allA, allR, gcl, hyi, glxR, ybbW, allB, ybbY, glxK, allE, allC, allD, fdrA, [ylbE] |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 508873 | 549616 | 40744 | 58 [0] | [0] 58 | copA–[ylbE] | copA,copA,copA,glsA,ybaT,cueR,ybbJ,qmcA,fetA,fetB,cnoX,ybbO,tesA,ybbA,ybbP,rhsD,ybbC,ylbH,ybbD,ylbI,ylbG,selU,allS,allA,allR,gcl,hyi,glxR,ybbW,allB,ybbY,glxK,allE,allC,allD,fdrA,[ylbE] |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 508872 | 0 (0.000) | 57 (0.780) | 40/98 | 0.1 | 100% | intergenic (+313/+3) | ybaQ/copA | putative DNA‑binding transcriptional regulator YbaQ/Cu(+) exporting P‑type ATPase |
? | NC_000913 | 549617 = | 0 (0.000) | intergenic (+1/‑10) | ylbE/ylbF | DUF1116 domain‑containing protein YlbE/DUF2877 domain‑containing protein YlbF |
CGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/508825‑508872 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCA > NC_000913/549617‑549665 CGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTG > 1:432680/1‑49 CGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTG < 1:290853/49‑1 CGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTG < 1:593635/49‑1 CGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAAC > 1:5287413/1‑50 GATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACG > 1:3527776/1‑50 GATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACG > 1:4803933/1‑50 CAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAA < 1:1408171/50‑1 CAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAA > 1:2700851/1‑50 AAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAAT < 1:4280990/50‑1 AAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAAT < 1:4908385/50‑1 AATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAAT > 1:1719992/1‑49 ATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGA < 1:2952981/50‑1 ATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGA < 1:1957377/50‑1 TGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGAC < 1:2493988/50‑1 TGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGAC < 1:250488/50‑1 TGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGAC < 1:2586891/50‑1 GCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGAC > 1:1892552/1‑49 GCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGAC > 1:379784/1‑49 GCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGAC > 1:4548318/1‑49 CGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGA > 1:2103241/1‑50 CCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATC < 1:700639/50‑1 CACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCA < 1:4503423/50‑1 ACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCAT < 1:2929676/50‑1 ACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCAT > 1:4305315/1‑50 CCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATC > 1:565793/1‑50 CCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATC < 1:434471/50‑1 CCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATC > 1:1624864/1‑49 CTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCA < 1:4630150/50‑1 AAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCC < 1:1871491/50‑1 AAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCC > 1:585147/1‑50 AAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATC < 1:4710433/49‑1 AAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATC < 1:1269381/49‑1 AGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCT > 1:672701/1‑50 GCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTC < 1:3431284/50‑1 GCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTC < 1:1701226/50‑1 CAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCT < 1:5216683/50‑1 CAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCT < 1:1458619/50‑1 CGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCT > 1:5455747/1‑50 GCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTT < 1:4280795/50‑1 GCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTT < 1:4606217/50‑1 GCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTT > 1:3130571/1‑50 CATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTG > 1:4831781/1‑50 ATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGC < 1:3899152/50‑1 ATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGC > 1:3207746/1‑50 ATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGC > 1:1602480/1‑50 ATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGC > 1:732553/1‑50 CGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAG > 1:1237753/1‑50 CGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAG < 1:2026207/50‑1 AATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAG < 1:4962306/50‑1 ATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGT < 1:3709277/50‑1 ATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGT < 1:4648155/50‑1 ATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGT < 1:2277636/50‑1 GATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAG > 1:3806035/1‑50 GATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAG > 1:3045030/1‑50 ATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGC < 1:96304/50‑1 TGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCG < 1:1492133/50‑1 TGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCA > 1:2234010/1‑50 CGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/508825‑508872 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCA > NC_000913/549617‑549665 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |