| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 997,868 | Δ6,818 bp | [elfA]–ycbF | [elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 997868 | 1004685 | 6818 | 98 [0] | [0] 101 | [elfA]–ycbF | [elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 0 (0.000) | 98 (1.350) | 62/98 | 0.0 | 100% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 0 (0.000) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/997819‑997867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > NC_000913/1004686‑1004734 TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGT < 1:4209505/50‑1TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGT < 1:2724433/50‑1 GTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTT > 1:365462/1‑50 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTT < 1:5504954/50‑1 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTT < 1:2800935/50‑1 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTT > 1:2266966/1‑50 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTT < 1:3925231/50‑1 CATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTG > 1:4263206/1‑50 CATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTG > 1:397654/1‑50 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGC > 1:5138861/1‑50 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGC < 1:2799410/50‑1 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGC > 1:3295872/1‑50 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGC > 1:4677228/1‑50 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTG < 1:1078409/49‑1 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTG < 1:26942/49‑1 TTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCC < 1:5116146/50‑1 TTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:2662614/1‑50 TTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:2995703/1‑50 TAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG < 1:2560475/49‑1 TAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG < 1:4318748/49‑1 TAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:3930035/1‑49 AAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCA < 1:861556/49‑1 AGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGG < 1:160586/50‑1 GGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGT > 1:2040263/1‑50 GGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGT < 1:529114/50‑1 GCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGT > 1:1224707/1‑49 CATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCA < 1:3020902/50‑1 CATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCA < 1:3078091/50‑1 CATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCA < 1:5448839/50‑1 CATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTC > 1:4225037/1‑49 ATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAA < 1:133608/50‑1 ATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAA > 1:3546177/1‑50 TTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAAT > 1:3938048/1‑50 TATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATT > 1:1808432/1‑50 TATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATT > 1:5177880/1‑50 ATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTC > 1:3277421/1‑50 ATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATT < 1:4073403/49‑1 TCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCC < 1:4896473/50‑1 TCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTC < 1:2421457/49‑1 TCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTC < 1:4754698/49‑1 CATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCC > 1:1957396/1‑50 ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCT > 1:3081095/1‑50 ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCT < 1:87119/50‑1 ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCT < 1:2245840/50‑1 ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCT > 1:4252714/1‑50 TATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTT < 1:2601004/50‑1 TATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTT < 1:2335560/50‑1 TATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTT > 1:5489013/1‑50 TATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTT > 1:4813457/1‑50 ATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTT > 1:5207354/1‑50 TTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTT < 1:2317481/50‑1 TTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTT < 1:790836/50‑1 TTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTT > 1:3206510/1‑50 TTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTT < 1:4071441/49‑1 TTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTG > 1:2073785/1‑50 TACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTG < 1:2385688/49‑1 CGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTC < 1:1716142/50‑1 CGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTC < 1:1976218/50‑1 CGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTC < 1:3966577/50‑1 CGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTC < 1:3104448/50‑1 CGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGT < 1:289892/49‑1 GAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 1:4526929/1‑50 GAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 1:1847427/1‑50 AAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 1:1361582/1‑49 AGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGA < 1:4934222/50‑1 AGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGA < 1:3549800/50‑1 GAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAA > 1:4404099/1‑50 GAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAA < 1:5138760/50‑1 GAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAA < 1:3528056/50‑1 AGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAC > 1:1270356/1‑50 ATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTC < 1:1395884/50‑1 ATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTC < 1:1362596/50‑1 CAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCG > 1:3223118/1‑49 CAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCG > 1:5486131/1‑49 AGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCA < 1:4210194/50‑1 AGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGC < 1:778224/49‑1 GGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCAC < 1:4003357/50‑1 ATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACA > 1:4457601/1‑49 ATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACA > 1:3970122/1‑49 TGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACAT > 1:3765551/1‑49 TGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACAT > 1:2912185/1‑49 ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAAT < 1:3034238/50‑1 ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAA < 1:3647444/49‑1 ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAA > 1:1212913/1‑49 ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAA < 1:1903361/49‑1 TAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATA > 1:1194316/1‑50 TAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATA < 1:552546/50‑1 TAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATA > 1:1721155/1‑50 TAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATA > 1:4076159/1‑50 ACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACG < 1:5321251/50‑1 ACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACG < 1:165714/50‑1 ACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACG < 1:689376/50‑1 ACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAC < 1:513562/49‑1 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > 1:2641545/1‑50 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > 1:62927/1‑50 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC < 1:1245963/50‑1 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC < 1:3837889/50‑1 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC < 1:865546/50‑1 TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/997819‑997867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > NC_000913/1004686‑1004734 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |