| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 997,868 | Δ6,818 bp | [elfA]–ycbF | [elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 997868 | 1004685 | 6818 | 98 [0] | [0] 101 | [elfA]–ycbF | [elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 0 (0.000) | 98 (1.350) | 62/98 | 0.0 | 100% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 0 (0.000) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGATGAAAAAAAGTGTATTGACGGCGTTTATAACTGTGGTATGTGCAACGT > NC_000913/997819‑997916 | tGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGt < 1:4209505‑M1/50‑2 (MQ=255)tGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGt < 1:2724433‑M1/50‑2 (MQ=255) gTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtt > 1:365462‑M1/1‑48 (MQ=255) tCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGttt < 1:5504954‑M1/50‑4 (MQ=255) tCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGttt < 1:2800935‑M1/50‑4 (MQ=255) tCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGttt > 1:2266966‑M1/1‑47 (MQ=255) tCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGttt < 1:3925231‑M1/50‑4 (MQ=255) cATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttg > 1:4263206‑M1/1‑46 (MQ=255) cATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttg > 1:397654‑M1/1‑46 (MQ=255) aTTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgc > 1:5138861‑M1/1‑45 (MQ=255) aTTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgc < 1:2799410‑M1/50‑6 (MQ=255) aTTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgc > 1:3295872‑M1/1‑45 (MQ=255) aTTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgc > 1:4677228‑M1/1‑45 (MQ=255) aTTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttg < 1:1078409‑M1/49‑5 (MQ=255) aTTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttg < 1:26942‑M1/49‑5 (MQ=255) tttAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgcc < 1:5116146‑M1/50‑7 (MQ=255) ttAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg > 1:2662614‑M1/1‑43 (MQ=255) ttAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg > 1:2995703‑M1/1‑43 (MQ=255) tAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg < 1:2560475‑M1/49‑8 (MQ=255) tAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg < 1:4318748‑M1/49‑8 (MQ=255) tAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg > 1:3930035‑M1/1‑42 (MQ=255) aaGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgca < 1:861556‑M1/49‑10 (MQ=255) aGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcagg < 1:160586‑M1/50‑12 (MQ=255) ggCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggt > 1:2040263‑M1/1‑38 (MQ=255) ggCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggt < 1:529114‑M1/50‑13 (MQ=255) gCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggt > 1:1224707‑M1/1‑37 (MQ=255) cATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtca < 1:3020902‑M1/50‑15 (MQ=255) cATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtca < 1:3078091‑M1/50‑15 (MQ=255) cATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtca < 1:5448839‑M1/50‑15 (MQ=255) cATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtc > 1:4225037‑M1/1‑36 (MQ=255) aTTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaa < 1:133608‑M1/50‑16 (MQ=255) aTTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaa > 1:3546177‑M1/1‑35 (MQ=255) ttATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaat > 1:3938048‑M1/1‑34 (MQ=255) tATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaatt > 1:1808432‑M1/1‑33 (MQ=255) tATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaatt > 1:5177880‑M1/1‑33 (MQ=255) aTCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattc > 1:3277421‑M1/1‑32 (MQ=255) aTCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaatt < 1:4073403‑M1/49‑18 (MQ=255) tCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcc < 1:4896473‑M1/50‑20 (MQ=255) tCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattc < 1:2421457‑M1/49‑19 (MQ=255) tCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattc < 1:4754698‑M1/49‑19 (MQ=255) cATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccc > 1:1957396‑M1/1‑30 (MQ=255) atatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccct > 1:3081095‑M1/1‑29 (MQ=255) atatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccct < 1:87119‑M1/50‑22 (MQ=255) atatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccct < 1:2245840‑M1/50‑22 (MQ=255) atatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccct > 1:4252714‑M1/1‑29 (MQ=255) tatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctt < 1:2601004‑M1/50‑23 (MQ=255) tatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctt < 1:2335560‑M1/50‑23 (MQ=255) tatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctt > 1:5489013‑M1/1‑28 (MQ=255) tatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctt > 1:4813457‑M1/1‑28 (MQ=255) atTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttt > 1:5207354‑M1/1‑27 (MQ=255) tttACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctttt < 1:2317481‑M1/50‑25 (MQ=255) tttACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctttt < 1:790836‑M1/50‑25 (MQ=255) tttACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctttt > 1:3206510‑M1/1‑26 (MQ=255) tttACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttt < 1:4071441‑M1/49‑24 (MQ=255) ttACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttg > 1:2073785‑M1/1‑25 (MQ=255) tACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttg < 1:2385688‑M1/49‑26 (MQ=255) cGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtc < 1:1716142‑M1/50‑29 (MQ=255) cGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtc < 1:1976218‑M1/50‑29 (MQ=255) cGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtc < 1:3966577‑M1/50‑29 (MQ=255) cGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtc < 1:3104448‑M1/50‑29 (MQ=255) cGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggt < 1:289892‑M1/49‑28 (MQ=255) gAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtcc > 1:4526929‑M1/1‑21 (MQ=255) gAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtcc > 1:1847427‑M1/1‑21 (MQ=255) aaGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtcc > 1:1361582‑M1/1‑20 (MQ=255) agagATCAGGATGATAACGtttgccgcaggtcaattcccttttggtccga < 1:4934222‑M1/50‑32 (MQ=255) agagATCAGGATGATAACGtttgccgcaggtcaattcccttttggtccga < 1:3549800‑M1/50‑32 (MQ=255) gagaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaa > 1:4404099‑M1/1‑18 (MQ=255) gagaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaa < 1:5138760‑M1/50‑33 (MQ=255) gagaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaa < 1:3528056‑M1/50‑33 (MQ=255) agaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaac > 1:1270356‑M1/1‑17 (MQ=255) aTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactc < 1:1395884‑M1/50‑36 (MQ=255) aTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactc < 1:1362596‑M1/50‑36 (MQ=255) cAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcg > 1:3223118‑M1/1‑13 (MQ=255) cAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcg > 1:5486131‑M1/1‑13 (MQ=255) aGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcgca < 1:4210194‑M1/50‑39 (MQ=255) aGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcgc < 1:778224‑M1/49‑38 (MQ=255) ggATGATAACGtttgccgcaggtcaattcccttttggtccgaactcgcac < 1:4003357‑M1/50‑40 (MQ=255) atgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcaca > 1:4457601‑M1/1‑9 (MQ=255) atgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcaca > 1:3970122‑M1/1‑9 (MQ=255) tgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcacat > 1:3765551‑M1/1‑8 (MQ=255) tgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcacat > 1:2912185‑M1/1‑8 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataat < 1:3034238‑M1/50‑45 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataa < 1:3647444‑M1/49‑44 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataa > 1:1212913‑M1/1‑6 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataa < 1:1903361‑M1/49‑44 (MQ=255) tAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataata > 1:1194316‑M1/1‑5 (MQ=255) tAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataata < 1:552546‑M1/50‑46 (MQ=255) tAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataata > 1:1721155‑M1/1‑5 (MQ=255) tAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataata > 1:4076159‑M1/1‑5 (MQ=255) aCGtttgccgcaggtcaattcccttttggtccgaactcgcacataatacg < 1:5321251‑M1/50‑48 (MQ=255) aCGtttgccgcaggtcaattcccttttggtccgaactcgcacataatacg < 1:165714‑M1/50‑48 (MQ=255) aCGtttgccgcaggtcaattcccttttggtccgaactcgcacataatacg < 1:689376‑M1/50‑48 (MQ=255) aCGtttgccgcaggtcaattcccttttggtccgaactcgcacataatac < 1:513562‑M1/49‑47 (MQ=255) gtttgccgcaggtcaattcccttttggtccgaactcgcacataatacgcc > 1:2641545‑M1/1‑1 (MQ=255) gtttgccgcaggtcaattcccttttggtccgaactcgcacataatacgcc > 1:62927‑M1/1‑1 (MQ=255) gtttgccgcaggtcaattcccttttggtccgaactcgcacataatacgcc < 1:1245963‑M1/50‑50 (MQ=255) gtttgccgcaggtcaattcccttttggtccgaactcgcacataatacgcc < 1:3837889‑M1/50‑50 (MQ=255) gtttgccgcaggtcaattcccttttggtccgaactcgcacataatacgcc < 1:865546‑M1/50‑50 (MQ=255) | TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGATGAAAAAAAGTGTATTGACGGCGTTTATAACTGTGGTATGTGCAACGT > NC_000913/997819‑997916 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |