| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,756,160 | Δ35,091 bp | [intA]–[lhgO] | 33 genes [intA], yfjH, alpA, yfjI, yfjJ, abpB, abpA, yfjM, rnlA, rnlB, yfjP, yfjQ, yfjR, ypjK, yfjS, yfjT, yfjU, yfjV, yfjW, ypjI, yfjX, yfjY, ypjJ, yfjZ, ypjF, ypjA, pinH, ypjB, ypjC, ileY, ygaQ, csiD, [lhgO] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2756160 | 2791250 | 35091 | 26 [0] | [0] 26 | [intA]–[lhgO] | [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjV,yfjW,ypjI,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,pinH,ypjB,ypjC,ileY,ygaQ,csiD,[lhgO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2756159 | 0 (0.000) | 26 (0.370) | 20/96 | 1.4 | 100% | coding (1/1242 nt) | intA | CP4‑57 prophage; integrase |
| ? | NC_000913 | 2791251 = | 0 (0.000) | intergenic (+1/‑22) | lhgO/gabD | L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase | |||||
AGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2756116‑2756159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATT > NC_000913/2791251‑2791298 AGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGA < 1:855300/50‑1 GCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAA < 1:1183860/50‑1 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGG < 1:4581397/50‑1 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAG < 1:2668513/49‑1 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAAC < 1:2587862/47‑1 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG < 1:849462/50‑1 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG < 1:841190/50‑1 TACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGT < 1:154241/49‑1 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC < 1:216595/50‑1 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAG < 1:3320317/49‑1 ggCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGA < 1:1585491/48‑1 AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTT < 1:4783764/50‑1 AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAAC < 1:3232455/48‑1 ACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTA < 1:3894576/50‑1 GGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACA < 1:1319308/50‑1 GGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACA < 1:164997/50‑1 AGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGT < 1:1795611/50‑1 GACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTA < 1:1875764/50‑1 GACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTA < 1:3631790/50‑1 ACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAA < 1:5234137/50‑1 ACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAA < 1:10661/50‑1 TCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACT > 1:3019043/1‑50 CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTT < 1:535135/49‑1 CCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAT < 1:4820805/50‑1 CACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATT < 1:1986567/50‑1 CACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATT < 1:500931/50‑1 AGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2756116‑2756159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATT > NC_000913/2791251‑2791298 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |