| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,756,160 | Δ35,091 bp | [intA]–[lhgO] | 33 genes [intA], yfjH, alpA, yfjI, yfjJ, abpB, abpA, yfjM, rnlA, rnlB, yfjP, yfjQ, yfjR, ypjK, yfjS, yfjT, yfjU, yfjV, yfjW, ypjI, yfjX, yfjY, ypjJ, yfjZ, ypjF, ypjA, pinH, ypjB, ypjC, ileY, ygaQ, csiD, [lhgO] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2756160 | 2791250 | 35091 | 26 [0] | [0] 26 | [intA]–[lhgO] | [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjV,yfjW,ypjI,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,pinH,ypjB,ypjC,ileY,ygaQ,csiD,[lhgO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2756159 | 0 (0.000) | 26 (0.370) | 20/96 | 1.4 | 100% | coding (1/1242 nt) | intA | CP4‑57 prophage; integrase |
| ? | NC_000913 | 2791251 = | 0 (0.000) | intergenic (+1/‑22) | lhgO/gabD | L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase | |||||
GGCACGTAGTGTGGATGCCTTACACGCCGCATTTAATCAATAACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATT > NC_000913/2791208‑2791298 | agctctattgtttacgttgggctaaacgcagggagactccccaCCTTTGa < 1:855300‑M2/7‑1 (MQ=255) gctctattgtttacgttgggctaaacgcagggagactccccaCCTTTGaa < 1:1183860‑M2/8‑1 (MQ=255) ttgtttacgttgggctaaacgcagggagactccccaCCTTTGAAAAc < 1:2587862‑M2/11‑1 (MQ=255) ttgtttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAgg < 1:4581397‑M2/14‑1 (MQ=255) ttgtttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAg < 1:2668513‑M2/13‑1 (MQ=255) tttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATg < 1:849462‑M2/17‑1 (MQ=255) tttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATg < 1:841190‑M2/17‑1 (MQ=255) tacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGt < 1:154241‑M2/18‑1 (MQ=255) cgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAg < 1:3320317‑M2/20‑1 (MQ=255) cgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGc < 1:216595‑M2/21‑1 (MQ=255) ggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGa < 1:1585491‑M2/26‑1 (MQ=255) aacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAAc < 1:3232455‑M2/29‑1 (MQ=255) aacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACtt < 1:4783764‑M2/31‑1 (MQ=255) acgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTa < 1:3894576‑M2/32‑1 (MQ=255) ggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACa < 1:1319308‑M2/38‑1 (MQ=255) ggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACa < 1:164997‑M2/38‑1 (MQ=255) agactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGt < 1:1795611‑M2/40‑1 (MQ=255) gactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTa < 1:1875764‑M2/41‑1 (MQ=255) gactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTa < 1:3631790‑M2/41‑1 (MQ=255) actccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTaa < 1:10661‑M2/42‑1 (MQ=255) actccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTaa < 1:5234137‑M2/42‑1 (MQ=255) tccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACt > 1:3019043‑M2/7‑50 (MQ=255) cccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACtt < 1:535135‑M2/45‑1 (MQ=255) ccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAt < 1:4820805‑M2/47‑1 (MQ=255) caCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAtt < 1:500931‑M2/48‑1 (MQ=255) caCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAtt < 1:1986567‑M2/48‑1 (MQ=255) | GGCACGTAGTGTGGATGCCTTACACGCCGCATTTAATCAATAACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATT > NC_000913/2791208‑2791298 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |