| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,184,782 | Δ6,916 bp | ubiK–yqiI | ubiK, ygiL, yqiG, insC‑5, insD‑5, yqiG, yqiH, yqiI | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3184782 | 3191697 | 6916 | 84 [0] | [0] 84 | ubiK–yqiI | ubiK,ygiL,yqiG,insC‑5,insD‑5,yqiG,yqiH,yqiI |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3184781 | 0 (0.000) | 80 (1.120) | 57/96 | 0.0 | 100% | intergenic (‑315/‑59) | ribB/ubiK | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/ubiquinone biosynthesis accessory factor UbiK |
| ? | NC_000913 | 3191698 = | 0 (0.000) | intergenic (+2/+41) | yqiI/glgS | putative fimbrial protein YqiI/surface composition regulator | |||||
CGCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3184732‑3184781‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCT > NC_000913/3191698‑3191746 CGCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT < 1:3023686/50‑1CGCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT < 1:4437585/50‑1CGCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT < 1:5108808/50‑1 GCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATA < 1:234369/50‑1 GCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATA > 1:3781545/1‑50 GCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATA < 1:4849226/50‑1 CTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATAT > 1:815537/1‑50 TAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATC > 1:585892/1‑50 ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTA < 1:887906/50‑1 TGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAA > 1:2394753/1‑50 ATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATA < 1:5055950/50‑1 ATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATA < 1:2425001/50‑1 ATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATA > 1:4639740/1‑50 ATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATA > 1:532643/1‑50 ATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAAT < 1:1503425/49‑1 TTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATAC < 1:3889469/50‑1 AGCGGCAGCAACTCATAGCTTCACATAATTCTGGTTTATATCTAATACA < 1:4999636/49‑1 AGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACA < 1:4896296/49‑1 AGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACA < 1:314674/49‑1 AGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACA > 1:4360956/1‑49 AGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACA > 1:2171003/1‑49 AGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACA < 1:1271543/49‑1 GCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAA > 1:2766760/1‑50 GCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAA < 1:3748066/49‑1 CGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAAC < 1:4640361/50‑1 GGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACA > 1:5318319/1‑50 GGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACA > 1:5435482/1‑50 GGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACA > 1:1180995/1‑50 GGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACA > 1:1534991/1‑50 GGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACA < 1:2019646/50‑1 GGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACA < 1:2442261/50‑1 GCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC > 1:1665318/1‑50 GCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC < 1:3456076/50‑1 CAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC > 1:1659467/1‑49 AGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACT > 1:245730/1‑49 GCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAA < 1:1870609/50‑1 GCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTA > 1:4311721/1‑49 CAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAA > 1:5267227/1‑49 CAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAA > 1:2384702/1‑49 AACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAA > 1:4496098/1‑50 AACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAA > 1:329484/1‑50 ACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAAC > 1:3140870/1‑50 ACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAAC < 1:1216265/50‑1 ACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAAC < 1:4845614/50‑1 CGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACG > 1:3581183/1‑50 GCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGG < 1:474782/50‑1 GCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGG > 1:158402/1‑50 CATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGG < 1:518996/50‑1 ATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGC < 1:2755861/50‑1 TAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGC > 1:3196194/1‑49 GCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCAT > 1:3029467/1‑50 GCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCAT > 1:5509114/1‑50 GCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCA < 1:3764485/49‑1 TTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCAT > 1:797279/1‑48 TTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCAT > 1:4167266/1‑48 TCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAG > 1:2466773/1‑50 CACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGG > 1:1557621/1‑50 CACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCA < 1:3948791/48‑1 CATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCC < 1:4305851/50‑1 CATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCC > 1:2673657/1‑50 ATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCC > 1:2430509/1‑50 TAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCG < 1:1388050/50‑1 TAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCG > 1:3171000/1‑50 TAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCG > 1:4885580/1‑50 AATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGT > 1:2612250/1‑50 ATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTT < 1:1757378/50‑1 ATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGT > 1:408004/1‑49 ATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGT > 1:2228867/1‑49 ATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGT > 1:2704614/1‑49 TTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTA > 1:1164911/1‑50 TTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTA < 1:1999214/50‑1 TTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTA < 1:211811/50‑1 CTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATA > 1:501615/1‑50 CTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTAT < 1:5224680/49‑1 CTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTAT < 1:2144557/49‑1 CTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTAT < 1:3286621/49‑1 TGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATAT > 1:2760871/1‑50 GGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATAT > 1:3391084/1‑49 GTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATC < 1:1787231/49‑1 GTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATAT > 1:5335636/1‑48 TATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTG > 1:5477762/1‑50 TATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTG > 1:2415758/1‑50 ATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTG < 1:1415053/49‑1 TATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCT < 1:4527839/50‑1 CGCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3184732‑3184781‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCT > NC_000913/3191698‑3191746 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |