| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,618,992 | Δ6,688 bp | rhsB–[yhhJ] | rhsB, yhhH, yhhI, [yhhJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3618992 | 3625679 | 6688 | 57 [0] | [0] 57 | rhsB–[yhhJ] | rhsB,yhhH,yhhI,[yhhJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3618991 | 0 (0.000) | 55 (0.770) | 40/96 | 0.1 | 100% | intergenic (+2/‑201) | nikR/rhsB | DNA‑binding transcriptional repressor NikR/rhs element protein RhsB |
| ? | NC_000913 | 3625680 = | NA (NA) | coding (1124/1125 nt) | yhhJ | ABC transporter family protein YhhJ | |||||
GCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3618943‑3618991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGA > NC_000913/3625680‑3625728 GCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT > 1:1235698/1‑49 CGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTA < 1:1087644/50‑1 CGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTA > 1:379223/1‑50 GGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTAC < 1:5358629/50‑1 CGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGC < 1:1409919/50‑1 CGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGC > 1:3632848/1‑50 GTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGC > 1:1092105/1‑49 GTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGC > 1:4108138/1‑49 GTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGC > 1:2296528/1‑49 TGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCA > 1:936627/1‑50 TGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCA < 1:2002734/50‑1 CGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATT > 1:775023/1‑50 GGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTG < 1:1203556/50‑1 GGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTG > 1:3689684/1‑50 GCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGT < 1:500360/50‑1 CACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTC > 1:2957627/1‑50 GGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCA < 1:4132259/50‑1 GGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCA < 1:2569130/50‑1 GGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCC > 1:5229039/1‑49 GCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAAT < 1:1305306/50‑1 CATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATt > 1:3710041/1‑49 CATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATC < 1:224349/50‑1 ATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCG > 1:3539403/1‑50 TTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGT > 1:3640274/1‑50 TTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGT > 1:703711/1‑50 GCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTT > 1:4973831/1‑50 CAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTC < 1:4309627/50‑1 CAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTT < 1:2048600/49‑1 CTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAA > 1:2567640/1‑50 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG > 1:4497060/1‑50 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG > 1:3124853/1‑50 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATC < 1:2037861/49‑1 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATC < 1:1906342/49‑1 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAAT < 1:5435731/48‑1 CCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGC < 1:4473250/50‑1 CCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGC < 1:280188/50‑1 CCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG < 1:2650607/49‑1 CGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG > 1:2289812/1‑48 CGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG > 1:3439418/1‑48 CGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG > 1:3130392/1‑48 GAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG > 1:4214966/1‑50 GAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG > 1:3350057/1‑50 AAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGC < 1:366834/50‑1 AAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG > 1:5026549/1‑49 AGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG > 1:5057772/1‑48 AAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCG > 1:5255947/1‑50 AAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCG > 1:5138656/1‑50 AGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCG > 1:1360906/1‑49 GATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGC > 1:3859131/1‑49 ATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAA > 1:4631034/1‑50 GAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATG < 1:5520342/49‑1 AGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT < 1:4691/50‑1 AGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT > 1:4084121/1‑50 AGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT < 1:354602/50‑1 AGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT < 1:2998861/50‑1 AGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT < 1:2164944/50‑1 TTACGCCATTGTCCCAATCTTCTTCCTGAATCGCAGCAGCGCAATGGTGA < 1:4668930/50‑1 GCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3618943‑3618991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGA > NC_000913/3625680‑3625728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |