| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,618,992 | Δ6,688 bp | rhsB–[yhhJ] | rhsB, yhhH, yhhI, [yhhJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3618992 | 3625679 | 6688 | 57 [0] | [0] 57 | rhsB–[yhhJ] | rhsB,yhhH,yhhI,[yhhJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3618991 | 0 (0.000) | 55 (0.770) | 40/96 | 0.1 | 100% | intergenic (+2/‑201) | nikR/rhsB | DNA‑binding transcriptional repressor NikR/rhs element protein RhsB |
| ? | NC_000913 | 3625680 = | NA (NA) | coding (1124/1125 nt) | yhhJ | ABC transporter family protein YhhJ | |||||
TGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGA > NC_000913/3625632‑3625728 | cggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTa < 1:1087644‑M2/2‑1 (MQ=255)cggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTa > 1:379223‑M2/49‑50 (MQ=255) ggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTAc < 1:5358629‑M2/3‑1 (MQ=255) cgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGc < 1:1409919‑M2/5‑1 (MQ=255) cgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGc > 1:3632848‑M2/46‑50 (MQ=255) gtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGc > 1:1092105‑M2/45‑49 (MQ=255) gtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGc > 1:4108138‑M2/45‑49 (MQ=255) gtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGc > 1:2296528‑M2/45‑49 (MQ=255) tgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCa > 1:936627‑M2/44‑50 (MQ=255) tgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCa < 1:2002734‑M2/7‑1 (MQ=255) cggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCAtt > 1:775023‑M2/42‑50 (MQ=255) ggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTg > 1:3689684‑M2/41‑50 (MQ=255) ggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTg < 1:1203556‑M2/10‑1 (MQ=255) gcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGt < 1:500360‑M2/11‑1 (MQ=255) cacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTc > 1:2957627‑M2/39‑50 (MQ=255) gggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTccc > 1:5229039‑M2/36‑49 (MQ=255) gggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCa < 1:4132259‑M2/15‑1 (MQ=255) gggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCa < 1:2569130‑M2/15‑1 (MQ=255) gcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAAt < 1:1305306‑M2/17‑1 (MQ=255) catttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAatt > 1:3710041‑M2/33‑49 (MQ=255) catttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATc < 1:224349‑M2/18‑1 (MQ=255) atttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCg > 1:3539403‑M2/32‑50 (MQ=255) tttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGt > 1:703711‑M2/31‑50 (MQ=255) tttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGt > 1:3640274‑M2/31‑50 (MQ=255) gcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCtt > 1:4973831‑M2/28‑50 (MQ=255) cagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCtt < 1:2048600‑M2/23‑1 (MQ=255) cagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTc < 1:4309627‑M2/24‑1 (MQ=255) cttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGaa > 1:2567640‑M2/22‑50 (MQ=255) gccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAAt < 1:5435731‑M2/30‑1 (MQ=255) gccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATc < 1:1906342‑M2/31‑1 (MQ=255) gccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATc < 1:2037861‑M2/31‑1 (MQ=255) gccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCg > 1:4497060‑M2/19‑50 (MQ=255) gccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCg > 1:3124853‑M2/19‑50 (MQ=255) ccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgc < 1:280188‑M2/33‑1 (MQ=255) ccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgc < 1:4473250‑M2/33‑1 (MQ=255) ccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCg < 1:2650607‑M2/32‑1 (MQ=255) cgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCg > 1:3439418‑M2/17‑48 (MQ=255) cgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCg > 1:2289812‑M2/17‑48 (MQ=255) cgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCg > 1:3130392‑M2/17‑48 (MQ=255) gaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag > 1:4214966‑M2/16‑50 (MQ=255) gaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag > 1:3350057‑M2/16‑50 (MQ=255) aaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcagc < 1:366834‑M2/36‑1 (MQ=255) aaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag > 1:5026549‑M2/15‑49 (MQ=255) aggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag > 1:5057772‑M2/14‑48 (MQ=255) aagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcg > 1:5255947‑M2/11‑50 (MQ=255) aagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcg > 1:5138656‑M2/11‑50 (MQ=255) agattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcg > 1:1360906‑M2/10‑49 (MQ=255) gattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcgc > 1:3859131‑M2/9‑49 (MQ=255) attgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:4631034‑M2/8‑50 (MQ=255) gagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg < 1:5520342‑M2/45‑1 (MQ=255) agtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGt < 1:4691‑M2/47‑1 (MQ=255) agtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGt > 1:4084121‑M2/4‑50 (MQ=255) agtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGt < 1:354602‑M2/47‑1 (MQ=255) agtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGt < 1:2998861‑M2/47‑1 (MQ=255) agtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGt < 1:2164944‑M2/47‑1 (MQ=255) tTACGCCATTGTCCCAATCTTCTTCCTGAATCGCAGCAGCGCAATGGTGa < 1:4668930‑M2/49‑1 (MQ=255) tACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGa > 1:1016243/1‑49 (MQ=255) | TGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGA > NC_000913/3625632‑3625728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |