| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,888,432 | Δ18,167 bp | tnaC–bglG | 17 genes tnaC, tnaA, tnaB, mdtL, yidZ, yieE, yieF, adeP, yieH, cbrB, cbrC, yieK, yieL, bglH, bglB, bglF, bglG |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3888432 | 3906598 | 18167 | 71 [0] | [0] 71 | tnaC–bglG | tnaC,tnaA,tnaB,mdtL,yidZ,yieE,yieF,adeP,yieH,cbrB,cbrC,yieK,yieL,bglH,bglB,bglF,bglG |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 0 (0.000) | 66 (0.930) | 46/96 | 0.0 | 100% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 0 (0.000) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3888382‑3888431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCA > NC_000913/3906599‑3906647 AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC > 1:1785563/1‑50AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC > 1:5533457/1‑50AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC > 1:2228156/1‑50 AAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC > 1:4744198/1‑49 AACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGA < 1:4769902/50‑1 AACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGA > 1:3620034/1‑50 CTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACT > 1:4726828/1‑50 CTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACT < 1:470935/50‑1 CTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACT > 1:3753373/1‑50 CTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACT > 1:187380/1‑50 CTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTT > 1:5571388/1‑49 TGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTT < 1:5288793/48‑1 TGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTT < 1:908313/48‑1 GAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCAC > 1:1044574/1‑50 GAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCAC > 1:5398480/1‑50 GAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCAC > 1:3009331/1‑50 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCAC < 1:1181382/49‑1 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTC < 1:3855846/47‑1 TAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTA > 1:4350594/1‑50 TAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTA < 1:3575902/50‑1 TAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGT < 1:3883764/49‑1 TAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGT < 1:2919136/49‑1 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATT < 1:4059188/50‑1 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTAT < 1:1809914/49‑1 TAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTC > 1:3961806/1‑50 TAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTC > 1:3851653/1‑50 TAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTC < 1:153431/50‑1 ATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTC < 1:5532455/50‑1 TGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCT > 1:1955616/1‑50 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGG > 1:32646/1‑50 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGG < 1:1090259/50‑1 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTG < 1:4326116/49‑1 GCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTT < 1:1611539/50‑1 GCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGT > 1:642351/1‑49 GCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGT < 1:621469/49‑1 GCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGT > 1:5337153/1‑49 GCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGT > 1:4079100/1‑49 CCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTA < 1:3711993/50‑1 CTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTAT > 1:468887/1‑50 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT > 1:4098449/1‑49 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT < 1:1360333/49‑1 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT > 1:175874/1‑49 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT > 1:5243282/1‑49 TGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCA < 1:4830386/50‑1 TGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT > 1:4590381/1‑48 TGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT > 1:1464732/1‑48 GTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAG > 1:2345239/1‑50 GTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAG > 1:5008130/1‑50 GTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAG > 1:3586559/1‑50 TCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAG < 1:2184084/49‑1 TCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAG < 1:5166655/49‑1 GCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTT > 1:2511261/1‑50 GCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTT < 1:1914023/49‑1 GCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTT < 1:4296766/49‑1 GCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTT < 1:4937017/48‑1 CGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTT < 1:5586388/49‑1 GAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGC > 1:2497026/1‑50 AGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCC > 1:2461008/1‑50 GATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTG < 1:532674/50‑1 GATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTG < 1:106283/50‑1 GATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTG < 1:4589082/50‑1 GATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTG < 1:1509673/50‑1 ATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGC < 1:2265455/50‑1 ATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGC > 1:2114825/1‑50 AGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGA < 1:943282/49‑1 GTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAT > 1:2621866/1‑50 GTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAT < 1:1766999/50‑1 TGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATG < 1:3051597/50‑1 TGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATG < 1:1793301/50‑1 CCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCA < 1:4671891/50‑1 CCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCA < 1:3143919/50‑1 AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3888382‑3888431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCA > NC_000913/3906599‑3906647 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |