| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,888,432 | Δ18,167 bp | tnaC–bglG | 17 genes tnaC, tnaA, tnaB, mdtL, yidZ, yieE, yieF, adeP, yieH, cbrB, cbrC, yieK, yieL, bglH, bglB, bglF, bglG |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3888432 | 3906598 | 18167 | 71 [0] | [0] 71 | tnaC–bglG | tnaC,tnaA,tnaB,mdtL,yidZ,yieE,yieF,adeP,yieH,cbrB,cbrC,yieK,yieL,bglH,bglB,bglF,bglG |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 0 (0.000) | 66 (0.930) | 46/96 | 0.0 | 100% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 0 (0.000) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTG > NC_000913/3888382‑3888480 | aaaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC > 1:1785563‑M1/1‑50 (MQ=255)aaaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC > 1:5533457‑M1/1‑50 (MQ=255)aaaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC > 1:2228156‑M1/1‑50 (MQ=255) aaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCc > 1:4744198‑M1/1‑48 (MQ=255) aaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcga < 1:4769902‑M1/50‑4 (MQ=255) aaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcga > 1:3620034‑M1/1‑47 (MQ=255) ctctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgact > 1:4726828‑M1/1‑45 (MQ=255) ctctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgact < 1:470935‑M1/50‑6 (MQ=255) ctctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgact > 1:3753373‑M1/1‑45 (MQ=255) ctctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgact > 1:187380‑M1/1‑45 (MQ=255) ctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgactt > 1:5571388‑M1/1‑43 (MQ=255) tGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgactt < 1:5288793‑M1/48‑7 (MQ=255) tGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgactt < 1:908313‑M1/48‑7 (MQ=255) gAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcac > 1:1044574‑M1/1‑41 (MQ=255) gAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcac > 1:5398480‑M1/1‑41 (MQ=255) gAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcac > 1:3009331‑M1/1‑41 (MQ=255) aGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcac < 1:1181382‑M1/49‑10 (MQ=255) aGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttc < 1:3855846‑M1/47‑8 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagta > 1:4350594‑M1/1‑36 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagta < 1:3575902‑M1/50‑15 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagt < 1:3883764‑M1/49‑14 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagt < 1:2919136‑M1/49‑14 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtatt < 1:4059188‑M1/50‑17 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtat < 1:1809914‑M1/49‑16 (MQ=255) taatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattc > 1:3961806‑M1/1‑33 (MQ=255) taatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattc > 1:3851653‑M1/1‑33 (MQ=255) taatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattc < 1:153431‑M1/50‑18 (MQ=255) atGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctc < 1:5532455‑M1/50‑20 (MQ=255) tGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctct > 1:1955616‑M1/1‑30 (MQ=255) tAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctgg > 1:32646‑M1/1‑28 (MQ=255) tAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctgg < 1:1090259‑M1/50‑23 (MQ=255) tAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctg < 1:4326116‑M1/49‑22 (MQ=255) gCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggtt < 1:1611539‑M1/50‑25 (MQ=255) gCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggt > 1:642351‑M1/1‑26 (MQ=255) gCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggt < 1:621469‑M1/49‑24 (MQ=255) gCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggt > 1:5337153‑M1/1‑26 (MQ=255) gCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggt > 1:4079100‑M1/1‑26 (MQ=255) ccTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggtta < 1:3711993‑M1/50‑26 (MQ=255) cTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttat > 1:468887‑M1/1‑24 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt > 1:4098449‑M1/1‑21 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt < 1:1360333‑M1/49‑29 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt > 1:175874‑M1/1‑21 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt > 1:5243282‑M1/1‑21 (MQ=255) tgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtca < 1:4830386‑M1/50‑31 (MQ=255) tgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt > 1:4590381‑M1/1‑20 (MQ=255) tgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt > 1:1464732‑M1/1‑20 (MQ=255) gtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcag > 1:2345239‑M1/1‑19 (MQ=255) gtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcag > 1:5008130‑M1/1‑19 (MQ=255) gtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcag > 1:3586559‑M1/1‑19 (MQ=255) tCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcag < 1:2184084‑M1/49‑32 (MQ=255) tCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcag < 1:5166655‑M1/49‑32 (MQ=255) gCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggtttt > 1:2511261‑M1/1‑14 (MQ=255) gCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttt < 1:1914023‑M1/49‑36 (MQ=255) gCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttt < 1:4296766‑M1/49‑36 (MQ=255) gCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggtt < 1:4937017‑M1/48‑35 (MQ=255) cGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggtttt < 1:5586388‑M1/49‑37 (MQ=255) gAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgc > 1:2497026‑M1/1‑12 (MQ=255) aGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcc > 1:2461008‑M1/1‑11 (MQ=255) gATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctg < 1:532674‑M1/50‑42 (MQ=255) gATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctg < 1:106283‑M1/50‑42 (MQ=255) gATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctg < 1:4589082‑M1/50‑42 (MQ=255) gATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctg < 1:1509673‑M1/50‑42 (MQ=255) aTAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgc < 1:2265455‑M1/50‑43 (MQ=255) aTAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgc > 1:2114825‑M1/1‑8 (MQ=255) aGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcga < 1:943282‑M1/49‑45 (MQ=255) gTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaat > 1:2621866‑M1/1‑4 (MQ=255) gTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaat < 1:1766999‑M1/50‑47 (MQ=255) tGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaatg < 1:3051597‑M1/50‑48 (MQ=255) tGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaatg < 1:1793301‑M1/50‑48 (MQ=255) ccgacttcaccagtattctctggttatgtcaggttttgcctgcgaatgca < 1:4671891‑M1/50‑50 (MQ=255) ccgacttcaccagtattctctggttatgtcaggttttgcctgcgaatgca < 1:3143919‑M1/50‑50 (MQ=255) | AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTG > NC_000913/3888382‑3888480 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |