Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 2,320,144 | Δ16,489 bp | [atoS]–[yfaA] | [atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA] |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 2320144 | 2336632 | 16489 | 83 [0] | [0] 82 | [atoS]–[yfaA] | [atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 2320143 | 0 (0.000) | 77 (1.080) | 55/96 | 0.0 | 100% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
? | NC_000913 | 2336633 = | 0 (0.000) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA |
CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAA > NC_000913/2320094‑2320192 | cTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT > 1:2631005‑M1/1‑50 (MQ=255) tGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATt > 1:4739966‑M1/1‑49 (MQ=255) gATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATtt > 1:3564535‑M1/1‑48 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttc < 1:4613491‑M1/50‑4 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttc < 1:1315427‑M1/50‑4 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttc < 1:4901831‑M1/50‑4 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATtt < 1:5144300‑M1/49‑3 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATt < 1:1026172‑M1/48‑2 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATt < 1:4350570‑M1/48‑2 (MQ=255) tGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttca < 1:3343248‑M1/50‑5 (MQ=255) gCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcacc < 1:661913‑M1/50‑7 (MQ=255) gCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcacc < 1:2523284‑M1/50‑7 (MQ=255) gCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcac > 1:1008007‑M1/1‑44 (MQ=255) gCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcac > 1:1809036‑M1/1‑44 (MQ=255) cAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcacca < 1:5430373‑M1/50‑8 (MQ=255) cAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcacca < 1:23095‑M1/50‑8 (MQ=255) aaTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccac > 1:3963650‑M1/1‑42 (MQ=255) aaTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccac < 1:4094398‑M1/50‑9 (MQ=255) aaTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccac > 1:2814073‑M1/1‑42 (MQ=255) aaTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccac > 1:2876715‑M1/1‑42 (MQ=255) tCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactc < 1:4999149‑M1/50‑11 (MQ=255) cTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcat < 1:4645241‑M1/50‑13 (MQ=255) cTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcat > 1:2648219‑M1/1‑38 (MQ=255) cTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcat < 1:131387‑M1/50‑13 (MQ=255) cTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcat < 1:263375‑M1/50‑13 (MQ=255) cTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactca < 1:4941932‑M1/49‑12 (MQ=255) tGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcatt > 1:2147931‑M1/1‑37 (MQ=255) gATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattg > 1:4450902‑M1/1‑36 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgc < 1:1151904‑M1/50‑16 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgc < 1:539724‑M1/50‑16 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattg < 1:4433391‑M1/49‑15 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattg < 1:5059924‑M1/49‑15 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcatt < 1:1838912‑M1/48‑14 (MQ=255) tGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgc > 1:4358874‑M1/1‑34 (MQ=255) gTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccac < 1:1653475‑M1/50‑19 (MQ=255) gTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgcca > 1:5276959‑M1/1‑32 (MQ=255) gTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgcca > 1:2153992‑M1/1‑32 (MQ=255) gTCATTGTCCCAACGCTTACTATTGGTTATACttcaccactcattgccac < 1:2081331‑M1/50‑19 (MQ=255) aTTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacatt < 1:835068‑M1/50‑22 (MQ=255) aTTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacatt > 1:4611002‑M1/1‑29 (MQ=255) tGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcc > 1:1175211‑M1/1‑27 (MQ=255) gTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcc < 1:1276828‑M1/49‑24 (MQ=255) tCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcctt < 1:5355751‑M1/50‑26 (MQ=255) tCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcct < 1:4907209‑M1/49‑25 (MQ=255) cccAACGCTTACTATTGGTTATATttcaccactcattgccacattccttg > 1:4158742‑M1/1‑24 (MQ=255) ccAACGCTTACTATTGGTTATATttcaccactcattgccacattccttg < 1:1480205‑M1/49‑27 (MQ=255) ccAACGCTTACTATTGGTTATATttcaccactcattgccacattccttg < 1:2524776‑M1/49‑27 (MQ=255) cAACGCTTACTATTGGTTATATttcaccactcattgccacattccttgtg > 1:4427136‑M1/1‑22 (MQ=255) aaCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtg > 1:184858‑M1/1‑21 (MQ=255) aCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta < 1:5549244‑M1/50‑31 (MQ=255) cGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgtat < 1:3063018‑M1/50‑32 (MQ=255) gCTTACTATTGGTTATATttcaccactcattgccacattccttgtgtata < 1:2265085‑M1/50‑33 (MQ=255) gCTTACTATTGGTTATATttcaccactcattgccacattccttgtgtata < 1:4054061‑M1/50‑33 (MQ=255) gCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta > 1:5483807‑M1/1‑18 (MQ=255) gCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta > 1:3819578‑M1/1‑18 (MQ=255) cTTACTATTGGTTATATttcaccactcattgccacattccttgtgtatag > 1:2734197‑M1/1‑17 (MQ=255) cTTACTATTGGTTATATttcaccactcattgccacattccttgtgtatag < 1:266392‑M1/50‑34 (MQ=255) ttACTATTGGTTATATttcaccactcattgccacattccttgtgtatagc > 1:3504177‑M1/1‑16 (MQ=255) ttACTATTGGTTATATttcaccactcattgccacattccttgtgtatagc > 1:4681240‑M1/1‑16 (MQ=255) tACTATTGGTTATATttcaccactcattgccacattccttgtgtatagc > 1:2521562‑M1/1‑15 (MQ=255) aCTATTGGTTATATttcaccactcattgccacattccttgtgtatagc < 1:1735174‑M1/48‑35 (MQ=255) aCTATTGGTTATATttcaccactcattgccacattccttgtgtatagc > 1:164827‑M1/1‑14 (MQ=255) aCTATTGGTTATATttcaccactcattgccacattccttgtgtatagc > 1:4039944‑M1/1‑14 (MQ=255) cTATTGGTTATATttcaccactcattgccacattccttgtgtatagcca < 1:2691224‑M1/49‑37 (MQ=255) tATTGGTTATATttcaccactcattgccacattccttgtgtatagccagc > 1:1574541‑M1/1‑12 (MQ=255) aTTGGTTATATttcaccactcattgccacattccttgtgtatagccagc > 1:5056530‑M1/1‑11 (MQ=255) ttGGTTATATttcaccactcattgccacattccttgtgtatagccagcca > 1:1614655‑M1/1‑10 (MQ=255) tGGTTATATttcaccactcattgccacattccttgtgtatagccagccat > 1:5091024‑M1/1‑9 (MQ=255) ggTTATATttcaccactcattgccacattccttgtgtatagccagccat < 1:143872‑M1/49‑42 (MQ=255) gTTATATttcaccactcattgccacattccttgtgtatagccagccatt < 1:4474829‑M1/49‑43 (MQ=255) ttATATttcaccactcattgccacattccttgtgtatagccagccatttt > 1:2135995‑M1/1‑6 (MQ=255) ttATATttcaccactcattgccacattccttgtgtatagccagccatttt > 1:5278920‑M1/1‑6 (MQ=255) ttATATttcaccactcattgccacattccttgtgtatagccagccatttt < 1:2398848‑M1/50‑45 (MQ=255) atatttcaccactcattgccacattccttgtgtatagccagccattttt < 1:3096632‑M1/49‑46 (MQ=255) atatttcaccactcattgccacattccttgtgtatagccagccattttt < 1:4050531‑M1/49‑46 (MQ=255) tatttcaccactcattgccacattccttgtgtatagccagccatttttta > 1:1546963‑M1/1‑3 (MQ=255) tatttcaccactcattgccacattccttgtgtatagccagccatttttta < 1:3067389‑M1/50‑48 (MQ=255) tatttcaccactcattgccacattccttgtgtatagccagccatttttta > 1:3237825‑M1/1‑3 (MQ=255) tttcaccactcattgccacattccttgtgtatagccagccattttttacg > 1:5021820‑M1/1‑1 (MQ=255) tttcaccactcattgccacattccttgtgtatagccagccattttttacg > 1:4127735‑M1/1‑1 (MQ=255) tttcaccactcattgccacattccttgtgtatagccagccattttttacg > 1:2736343‑M1/1‑1 (MQ=255) tttcaccactcattgccacattccttgtgtatagccagccattttttacg > 1:3523282‑M1/1‑1 (MQ=255) tttcaccactcattgccacattccttgtgtatagccagccattttttacg < 1:2138899‑M1/50‑50 (MQ=255) | CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAA > NC_000913/2320094‑2320192 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |