| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2798364 = | 45 (0.620) | 25 (0.420) | 21/80 | 0.8 | 39.5% | coding (132/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| ? | NC_000913 | = 2798360 | 40 (0.680) | coding (136/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity | |||||
GGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCATT > NC_000913/2798316‑2798412 | ccaggtgctaattttttcctggcgctctgccagttcacgctgctgctgtt < 1:2265110‑M1/2‑1 (MQ=255) aggtgctaattttttcctggcgctctgccagttcacgctgctgctgttct < 1:2745131‑M1/4‑1 (MQ=255) aggtgctaattttttcctggcgctctgccagttcacgctgctgctgttct < 1:3057378‑M1/4‑1 (MQ=255) gtgctaattttttcctggcgctctgccagttcacgctgctgctgttcttc < 1:1842192‑M1/6‑1 (MQ=255) gtgctaattttttcctggcgctctgccagttcacgctgctgctgttcttc < 1:283421‑M1/6‑1 (MQ=255) tgctaattttttcctggcgctctgccagttcacgctgctgctgttcttct > 1:2546331‑M1/44‑50 (MQ=255) tgctaattttttcctggcgctctgccagttcacgctgctgctgttcttct < 1:5573517‑M1/7‑1 (MQ=255) gctaattttttcctggcgctctgccagttcacgctgctgctgttcttctt < 1:877235‑M1/8‑1 (MQ=255) ctaattttttcctggcgctctgccagttcacgctgctgctgttcttcttc < 1:4780543‑M1/9‑1 (MQ=255) ctaattttttcctggcgctctgccagttcacgctgctgctgttcttcttc > 1:4958518‑M1/42‑50 (MQ=255) ctaattttttcctggcgctctgccagttcacgctgctgctgttcttctt > 1:3606363‑M1/42‑49 (MQ=255) aTTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcttc < 1:1340786/50‑1 (MQ=255) aTTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttctt > 1:2951274/1‑49 (MQ=255) ttttttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCa < 1:4778303/50‑1 (MQ=255) attttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACg < 1:3229640‑M1/12‑1 (MQ=255) tttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACg < 1:2553167/49‑1 (MQ=255) tttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGt > 1:1592023/1‑50 (MQ=255) tttttcctggcgctctgccagttcacgctgctgcagTTCTTCTTCACGtc < 1:4646299‑M1/14‑1 (MQ=255) ttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtc > 1:3112886/1‑50 (MQ=255) ttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtc > 1:343968/1‑50 (MQ=255) ttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtc > 1:102019/1‑50 (MQ=255) tttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtct > 1:2712004‑M1/35‑49 (MQ=255) cTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtctt < 1:1955303/49‑1 (MQ=255) cTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtctt < 1:2567175/49‑1 (MQ=255) cctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttct < 1:2697858‑M1/19‑1 (MQ=255) gcgcTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtctttctt < 1:4376433/50‑1 (MQ=255) gcgcTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtctttct < 1:4532390/49‑1 (MQ=255) tggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttctt < 1:2874565‑M1/20‑1 (MQ=255) cgcTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTctttcttt < 1:4436386/50‑1 (MQ=255) gcTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTa < 1:3288929/50‑1 (MQ=255) ctctGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAg < 1:2303225/50‑1 (MQ=255) ctctGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAg < 1:563158/50‑1 (MQ=255) tctGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGt > 1:3609338/1‑50 (MQ=255) gctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGt < 1:2942763‑M1/24‑1 (MQ=255) gctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGt < 1:5004007‑M1/24‑1 (MQ=255) gctctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTg > 1:3461935‑M1/26‑50 (MQ=255) gccctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGt < 1:2942709‑M1/24‑1 (MQ=255) ccAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGAc < 1:4872830/49‑1 (MQ=255) tgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACaa < 1:1545869‑M1/29‑1 (MQ=255) cAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACaa > 1:3178221/1‑50 (MQ=255) aGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAAc < 1:2954100/50‑1 (MQ=255) aGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAAc < 1:5496272/50‑1 (MQ=255) gTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAAcc > 1:1726802/1‑50 (MQ=255) gTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAAcc < 1:2169646/50‑1 (MQ=255) ttCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAAccc > 1:1325664/1‑50 (MQ=255) cagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAAccc < 1:5248687‑M1/32‑1 (MQ=255) cagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAAccc < 1:4232217‑M1/32‑1 (MQ=255) agttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCt > 1:716180‑M1/18‑50 (MQ=255) gttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTg > 1:2565702‑M1/17‑50 (MQ=255) cACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCt > 1:972226/1‑49 (MQ=255) cACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCt < 1:2754639/49‑1 (MQ=255) aCGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTg < 1:3497175/49‑1 (MQ=255) aCGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTg < 1:759648/49‑1 (MQ=255) aCGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTg < 1:110491/49‑1 (MQ=255) aCGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTg < 1:3255304/49‑1 (MQ=255) gctgctgctGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAt < 1:4905953/50‑1 (MQ=255) gctgctgctGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAt > 1:4865951/1‑50 (MQ=255) cacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGaa > 1:335712‑M1/14‑49 (MQ=255) cacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGaa > 1:1285257‑M1/14‑49 (MQ=255) cacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAt < 1:3030542‑M1/37‑1 (MQ=255) acgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtt > 1:2591306‑M1/13‑50 (MQ=255) acgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtt < 1:5421037‑M1/38‑1 (MQ=255) acgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAt > 1:1378664‑M1/13‑49 (MQ=255) tgctgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAttt > 1:2293853/1‑50 (MQ=255) ctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAttttt < 1:1037296‑M1/41‑1 (MQ=255) ctgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAttttt > 1:35102/1‑50 (MQ=255) ctgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAttttt < 1:3858037/50‑1 (MQ=255) ctgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtttt < 1:4490833/49‑1 (MQ=255) gctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTc > 1:217023/1‑49 (MQ=255) ctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTc > 1:1372570/1‑48 (MQ=255) tgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAg < 1:1685724‑M1/45‑1 (MQ=255) tgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAg > 1:1078334/1‑50 (MQ=255) tgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAg > 1:81879/1‑50 (MQ=255) gctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAg < 1:4823326‑M1/45‑1 (MQ=255) ttcttcttcttcACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGc < 1:1146893/49‑1 (MQ=255) ctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAg > 1:951060‑M1/4‑48 (MQ=255) tgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAt < 1:5302069‑M1/48‑1 (MQ=255) cttcttcttcACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAtt > 1:2267197/1‑50 (MQ=255) cttcttcttcACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAt < 1:4483205/49‑1 (MQ=255) cttcttcttcACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAt < 1:1370900/49‑1 (MQ=255) cttcttcttcACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAt < 1:4979500/49‑1 (MQ=255) TTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAt > 1:4451695‑M1/1‑48 (MQ=255) | GGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCATT > NC_000913/2798316‑2798412 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |