| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2798364 = | 45 (0.620) | 25 (0.420) | 21/80 | 0.8 | 39.5% | coding (132/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| ? | NC_000913 | = 2798360 | 40 (0.680) | coding (136/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity | |||||
AGCCAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAG > NC_000913/2798311‑2798408 | agccagGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGctgctgctg > 1:4528177/1‑50 (MQ=255)agccagGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGctgctgctg > 1:4306812/1‑50 (MQ=255)agccagGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGctgctgctg > 1:5086009/1‑50 (MQ=255)agccagGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGctgctgctg > 1:2746878/1‑50 (MQ=255)agccagGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGctgctgctg > 1:5501064/1‑50 (MQ=255)agccagGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGctgctgctg > 1:2289040/1‑50 (MQ=255) ccAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGtt < 1:2265110‑M2/50‑3 (MQ=255) aGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttct < 1:2745131‑M2/50‑5 (MQ=255) aGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttct < 1:3057378‑M2/50‑5 (MQ=255) gTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttc < 1:283421‑M2/50‑7 (MQ=255) gTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttc < 1:1842192‑M2/50‑7 (MQ=255) tGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttct < 1:5573517‑M2/50‑8 (MQ=255) tGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttct > 1:2546331‑M2/1‑43 (MQ=255) gCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttctt < 1:877235‑M2/50‑9 (MQ=255) cTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttc > 1:4958518‑M2/1‑41 (MQ=255) cTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttc < 1:4780543‑M2/50‑10 (MQ=255) cTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttctt > 1:3606363‑M2/1‑41 (MQ=255) aTTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcttc < 1:1340786/50‑1 (MQ=255) aTTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttctt > 1:2951274/1‑49 (MQ=255) aTTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacg < 1:3229640‑M2/50‑13 (MQ=255) ttttttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCa < 1:4778303/50‑1 (MQ=255) tttttCCTGGCGCTCTGCCAGTTCACGCTGCTGCAGttcttcttcacgtc < 1:4646299‑M2/50‑15 (MQ=255) tttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtct > 1:2712004‑M2/1‑34 (MQ=255) tttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACg < 1:2553167/49‑1 (MQ=255) tttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGt > 1:1592023/1‑50 (MQ=255) ttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtc > 1:3112886/1‑50 (MQ=255) ttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtc > 1:102019/1‑50 (MQ=255) ttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtc > 1:343968/1‑50 (MQ=255) ccTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttct < 1:2697858‑M2/50‑20 (MQ=255) cTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtctt < 1:2567175/49‑1 (MQ=255) cTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtctt < 1:1955303/49‑1 (MQ=255) tGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctt < 1:2874565‑M2/49‑21 (MQ=255) gcgcTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtctttctt < 1:4376433/50‑1 (MQ=255) gcgcTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtctttct < 1:4532390/49‑1 (MQ=255) cgcTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTctttcttt < 1:4436386/50‑1 (MQ=255) gcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtg > 1:3461935‑M2/1‑25 (MQ=255) gcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagt < 1:5004007‑M2/49‑25 (MQ=255) gcTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagt < 1:2942763‑M2/49‑25 (MQ=255) gcTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTa < 1:3288929/50‑1 (MQ=255) gcCCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagt < 1:2942709‑M2/49‑25 (MQ=255) ctctGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAg < 1:2303225/50‑1 (MQ=255) ctctGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAg < 1:563158/50‑1 (MQ=255) tctGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGt > 1:3609338/1‑50 (MQ=255) tGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaa < 1:1545869‑M2/50‑30 (MQ=255) ccAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGAc < 1:4872830/49‑1 (MQ=255) cAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccc < 1:5248687‑M2/50‑33 (MQ=255) cAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccc < 1:4232217‑M2/50‑33 (MQ=255) cAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACaa > 1:3178221/1‑50 (MQ=255) aGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccct > 1:716180‑M2/1‑17 (MQ=255) aGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAAc < 1:2954100/50‑1 (MQ=255) aGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAAc < 1:5496272/50‑1 (MQ=255) gTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctg > 1:2565702‑M2/1‑16 (MQ=255) gTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAAcc > 1:1726802/1‑50 (MQ=255) gTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAAcc < 1:2169646/50‑1 (MQ=255) ttCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAAccc > 1:1325664/1‑50 (MQ=255) cACGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctgaat < 1:3030542‑M2/50‑38 (MQ=255) cACGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctgaa > 1:335712‑M2/1‑13 (MQ=255) cACGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctgaa > 1:1285257‑M2/1‑13 (MQ=255) cACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCt > 1:972226/1‑49 (MQ=255) cACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCt < 1:2754639/49‑1 (MQ=255) aCGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctgaatt > 1:2591306‑M2/1‑12 (MQ=255) aCGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctgaatt < 1:5421037‑M2/50‑39 (MQ=255) aCGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctgaat > 1:1378664‑M2/1‑12 (MQ=255) aCGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTg < 1:759648/49‑1 (MQ=255) aCGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTg < 1:110491/49‑1 (MQ=255) aCGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTg < 1:3497175/49‑1 (MQ=255) aCGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTg < 1:3255304/49‑1 (MQ=255) gctgctgctGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAt > 1:4865951/1‑50 (MQ=255) gctgctgctGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAt < 1:4905953/50‑1 (MQ=255) ctgctgctgttcttcttcacgtctttctttagtgacaaccctgaattttt < 1:1037296‑M2/50‑42 (MQ=255) tgctgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAttt > 1:2293853/1‑50 (MQ=255) ctgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAttttt < 1:3858037/50‑1 (MQ=255) ctgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAttttt > 1:35102/1‑50 (MQ=255) ctgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtttt < 1:4490833/49‑1 (MQ=255) tgctgttcttcttcacgtctttctttagtgacaaccctgaatttttcgag < 1:1685724‑M2/50‑46 (MQ=255) gctgttcttcttcacgtctttctttagtgacaaccctgaatttttcgag < 1:4823326‑M2/49‑46 (MQ=255) gctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTc > 1:217023/1‑49 (MQ=255) ctgttcttcttcacgtctttctttagtgacaaccctgaatttttcgag > 1:951060‑M2/1‑3 (MQ=255) ctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTc > 1:1372570/1‑48 (MQ=255) tgttcttcttcacgtctttctttagtgacaaccctgaatttttcgagcat < 1:5302069‑M2/50‑49 (MQ=255) tgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAg > 1:81879/1‑50 (MQ=255) tgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAg > 1:1078334/1‑50 (MQ=255) | AGCCAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAG > NC_000913/2798311‑2798408 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |