| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4400288 | 47 (0.650) | 53 (0.760) | 42/94 | 0.1 | 54.4% | coding (1/309 nt) | hfq | RNA‑binding protein Hfq |
| ? | NC_000913 | 4400296 = | 44 (0.630) | coding (9/309 nt) | hfq | RNA‑binding protein Hfq | |||||
Only 100 of 104 total aligned reads displayed.
CAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG > NC_000913/4400239‑4400337 | cAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA > 1:3074391‑M1/1‑50 (MQ=255) aGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAt > 1:1641970/1‑50 (MQ=255) aGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAt < 1:5574846/50‑1 (MQ=255) aGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAt > 1:852313/1‑50 (MQ=255) aGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA < 1:2882037‑M1/49‑1 (MQ=255) gAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAgg > 1:5026728‑M1/1‑48 (MQ=255) gAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAgg < 1:578799‑M1/50‑3 (MQ=255) gAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAgg < 1:3611226‑M1/50‑3 (MQ=255) aaTCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggg > 1:3589969‑M1/1‑47 (MQ=255) aaTCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggg < 1:5357409‑M1/50‑4 (MQ=255) aaTCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATgg > 1:4138886/1‑50 (MQ=255) aTCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAgggg < 1:2913126‑M1/50‑5 (MQ=255) aTCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGc > 1:5094309/1‑50 (MQ=255) aTCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGc > 1:2412015/1‑50 (MQ=255) tCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGc > 1:5225908/1‑49 (MQ=255) gAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaa > 1:4691135‑M1/1‑43 (MQ=255) gAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTa < 1:1656148/49‑1 (MQ=255) aaaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaat < 1:500945‑M1/50‑9 (MQ=255) aaaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaat < 1:4953525‑M1/50‑9 (MQ=255) aaaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAg > 1:4777630/1‑50 (MQ=255) aaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatc > 1:4367913‑M1/1‑41 (MQ=255) aaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatc < 1:3414472‑M1/50‑10 (MQ=255) aGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatct > 1:2374388‑M1/1‑40 (MQ=255) gTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatcttt < 1:3667624‑M1/50‑13 (MQ=255) cAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAAt > 1:2811832/1‑50 (MQ=255) aaaGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaa < 1:4120113‑M1/50‑17 (MQ=255) aaaGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaa < 1:1956507‑M1/50‑17 (MQ=255) aaaGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttaca < 1:1717511‑M1/49‑16 (MQ=255) aaaGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATc < 1:684728/50‑1 (MQ=255) aaGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttac > 1:5268431‑M1/1‑33 (MQ=255) aGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaaga < 1:2488951‑M1/50‑19 (MQ=255) aGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaaga < 1:3517903‑M1/50‑19 (MQ=255) aGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaaga < 1:4552236‑M1/50‑19 (MQ=255) aGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCtt < 1:3167737/50‑1 (MQ=255) aGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCtt > 1:2396128/1‑50 (MQ=255) gTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttac > 1:779231‑M1/1‑31 (MQ=255) gTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCtt > 1:4385271/1‑49 (MQ=255) tACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTa < 1:1819592/50‑1 (MQ=255) aCAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatcc > 1:2739594‑M1/1‑29 (MQ=255) cAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccg < 1:629487‑M1/50‑23 (MQ=255) cAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTAc < 1:3114261/49‑1 (MQ=255) cAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTAc < 1:2674648/49‑1 (MQ=255) cAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTAc < 1:5232822/49‑1 (MQ=255) aaaTAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgt > 1:367677‑M1/1‑27 (MQ=255) aaaTAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTAc > 1:2244196/1‑48 (MQ=255) aaTAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgtt > 1:1390956‑M1/1‑26 (MQ=255) aaTAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTAc > 1:2761350/1‑47 (MQ=255) aaTAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTAc > 1:3544718/1‑47 (MQ=255) tAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcc > 1:2795986‑M1/1‑24 (MQ=255) tAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcc > 1:1746555‑M1/1‑24 (MQ=255) aaGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATc > 1:571271/1‑50 (MQ=255) aGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcct < 1:5195195‑M1/49‑28 (MQ=255) aGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcct > 1:4809854‑M1/1‑22 (MQ=255) aGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATcc < 1:4618655/50‑1 (MQ=255) aGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATcc > 1:3364480/1‑50 (MQ=255) aGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATc < 1:1102318/49‑1 (MQ=255) gCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctga < 1:5404032‑M1/50‑30 (MQ=255) cATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaa < 1:2514486‑M1/50‑31 (MQ=255) cATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGt < 1:311856/50‑1 (MQ=255) atatAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaac < 1:4190353‑M1/50‑32 (MQ=255) atatAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaac < 1:5220997‑M1/50‑32 (MQ=255) atatAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaac < 1:29576‑M1/50‑32 (MQ=255) atatAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaac > 1:496255‑M1/1‑19 (MQ=255) atatAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGtt < 1:1811520/50‑1 (MQ=255) atatAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGtt < 1:2358035/50‑1 (MQ=255) atatAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGtt > 1:498367/1‑50 (MQ=255) tataAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacg < 1:4359899‑M1/50‑33 (MQ=255) tataAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacg > 1:174522‑M1/1‑18 (MQ=255) tataAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacg > 1:2809900‑M1/1‑18 (MQ=255) tataAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTc > 1:2980659/1‑50 (MQ=255) aaGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCt > 1:4761767/1‑49 (MQ=255) aGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgcact < 1:107615‑M1/50‑37 (MQ=255) aGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgcac < 1:2322038‑M1/49‑36 (MQ=255) aGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGa < 1:485152/50‑1 (MQ=255) aGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGa < 1:5370144/50‑1 (MQ=255) ggAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgcactg > 1:4539784‑M1/1‑13 (MQ=255) ggAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGaa < 1:5536341/50‑1 (MQ=255) aaaaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcg > 1:576932‑M1/1‑11 (MQ=255) aaaaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcg > 1:2125629‑M1/1‑11 (MQ=255) aaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcgtc < 1:1872364‑M1/50‑42 (MQ=255) aaGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCa > 1:5333438/1‑50 (MQ=255) agagagAAggggcaatctttacaagatccgttcctgaacgcactgcgtcg > 1:4094741‑M1/1‑8 (MQ=255) agagagAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCAc < 1:3629629/50‑1 (MQ=255) agagagAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCAc > 1:1363017/1‑50 (MQ=255) gagagaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgg < 1:3548946‑M1/50‑44 (MQ=255) agagaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgg > 1:4070880‑M1/1‑6 (MQ=255) gagaAggggcaatctttacaagatccgttcctgaacgcactgcgtcggga < 1:3161188‑M1/50‑46 (MQ=255) agaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaa < 1:1291388‑M1/50‑47 (MQ=255) agaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCg > 1:946694/1‑50 (MQ=255) agaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCg > 1:969715/1‑50 (MQ=255) gaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaac > 1:4827386‑M1/1‑3 (MQ=255) gaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaac > 1:151471‑M1/1‑3 (MQ=255) gaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaac < 1:675663‑M1/50‑48 (MQ=255) gaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGt < 1:756565/50‑1 (MQ=255) aaTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTc < 1:985827/50‑1 (MQ=255) aaTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTc < 1:691301/50‑1 (MQ=255) aaTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTc > 1:4022405/1‑50 (MQ=255) aaTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTc > 1:388279/1‑50 (MQ=255) aaTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTc < 1:3685955/50‑1 (MQ=255) aggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacgt < 1:5585876‑M1/50‑50 (MQ=255) | CAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG > NC_000913/4400239‑4400337 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |