| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4400288 | 47 (0.650) | 53 (0.760) | 42/94 | 0.1 | 54.4% | coding (1/309 nt) | hfq | RNA‑binding protein Hfq |
| ? | NC_000913 | 4400296 = | 44 (0.630) | coding (9/309 nt) | hfq | RNA‑binding protein Hfq | |||||
AAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTG > NC_000913/4400247‑4400345 | aaaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAg > 1:4777630/1‑50 (MQ=255) gaatcgaaaggttcaaagtacaaataagcatataaggaaaagagagaagg < 1:578799‑M2/2‑1 (MQ=255) gaatcgaaaggttcaaagtacaaataagcatataaggaaaagagagaagg < 1:3611226‑M2/2‑1 (MQ=255) gaatcgaaaggttcaaagtacaaataagcatataaggaaaagagagaagg > 1:5026728‑M2/49‑50 (MQ=255) aatcgaaaggttcaaagtacaaataagcatataaggaaaagagagaaggg > 1:3589969‑M2/48‑50 (MQ=255) aatcgaaaggttcaaagtacaaataagcatataaggaaaagagagaaggg < 1:5357409‑M2/3‑1 (MQ=255) atcgaaaggttcaaagtacaaataagcatataaggaaaagagagaagggg > 1:3882041‑M2/47‑50 (MQ=255) atcgaaaggttcaaagtacaaataagcatataaggaaaagagagaagggg < 1:2913126‑M2/4‑1 (MQ=255) gaaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCaa > 1:4691135‑M2/44‑50 (MQ=255) cAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAAt > 1:2811832/1‑50 (MQ=255) aaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAAt < 1:500945‑M2/8‑1 (MQ=255) aaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAAt < 1:4953525‑M2/8‑1 (MQ=255) aaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATc > 1:4367913‑M2/42‑50 (MQ=255) aaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATc < 1:3414472‑M2/9‑1 (MQ=255) aaaGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATc < 1:684728/50‑1 (MQ=255) aggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCt > 1:2374388‑M2/41‑50 (MQ=255) aGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCtt > 1:2396128/1‑50 (MQ=255) aGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCtt < 1:3167737/50‑1 (MQ=255) gttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCttt < 1:3667624‑M2/12‑1 (MQ=255) gTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCtt > 1:2694693/1‑49 (MQ=255) gTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCtt > 1:4385271/1‑49 (MQ=255) tACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTa < 1:1819592/50‑1 (MQ=255) cAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTAc < 1:5232822/49‑1 (MQ=255) cAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTAc < 1:2674648/49‑1 (MQ=255) cAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTAc < 1:3114261/49‑1 (MQ=255) aaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACaa < 1:1956507‑M2/16‑1 (MQ=255) aaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACaa < 1:4120113‑M2/16‑1 (MQ=255) aaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACa < 1:1717511‑M2/15‑1 (MQ=255) aaaTAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTAc > 1:2244196/1‑48 (MQ=255) aagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc > 1:5268431‑M2/34‑47 (MQ=255) aaTAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTAc > 1:2761350/1‑47 (MQ=255) aaTAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTAc > 1:3544718/1‑47 (MQ=255) agtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGa < 1:2488951‑M2/18‑1 (MQ=255) agtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGa < 1:3517903‑M2/18‑1 (MQ=255) agtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGa < 1:4552236‑M2/18‑1 (MQ=255) gtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc > 1:779231‑M2/32‑45 (MQ=255) aaGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATc > 1:571271/1‑50 (MQ=255) acaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATcc > 1:2739594‑M2/30‑50 (MQ=255) aGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATcc < 1:4618655/50‑1 (MQ=255) aGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATcc > 1:3364480/1‑50 (MQ=255) aGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATc < 1:1102318/49‑1 (MQ=255) caaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCg < 1:629487‑M2/22‑1 (MQ=255) cATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGt < 1:311856/50‑1 (MQ=255) aaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGt > 1:367677‑M2/28‑50 (MQ=255) atatAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGtt < 1:1811520/50‑1 (MQ=255) atatAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGtt > 1:498367/1‑50 (MQ=255) atatAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGtt < 1:2358035/50‑1 (MQ=255) aataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGtt > 1:1390956‑M2/27‑50 (MQ=255) tataAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTc > 1:2980659/1‑50 (MQ=255) taagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTcc > 1:1746555‑M2/25‑50 (MQ=255) taagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTcc > 1:2795986‑M2/25‑50 (MQ=255) taAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCt < 1:999063/50‑1 (MQ=255) agcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCt < 1:5195195‑M2/27‑1 (MQ=255) agcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCt > 1:4809854‑M2/23‑49 (MQ=255) aaGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCt > 1:4761767/1‑49 (MQ=255) gcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGa < 1:5404032‑M2/29‑1 (MQ=255) aGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGa < 1:485152/50‑1 (MQ=255) aGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGa < 1:5370144/50‑1 (MQ=255) ggAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGaa < 1:5536341/50‑1 (MQ=255) catataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGaa < 1:2514486‑M2/30‑1 (MQ=255) atataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAAc < 1:29576‑M2/31‑1 (MQ=255) atataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAAc < 1:4190353‑M2/31‑1 (MQ=255) atataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAAc > 1:496255‑M2/20‑50 (MQ=255) atataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAAc < 1:5220997‑M2/31‑1 (MQ=255) tataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACg < 1:4359899‑M2/32‑1 (MQ=255) tataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACg > 1:2809900‑M2/19‑50 (MQ=255) tataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACg > 1:174522‑M2/19‑50 (MQ=255) aaGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCa > 1:5333438/1‑50 (MQ=255) agagagAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCAc < 1:3629629/50‑1 (MQ=255) agagagAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCAc > 1:1363017/1‑50 (MQ=255) aggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCAc < 1:2322038‑M2/35‑1 (MQ=255) aggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACt < 1:107615‑M2/36‑1 (MQ=255) ggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTg > 1:4539784‑M2/14‑50 (MQ=255) agaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCg > 1:946694/1‑50 (MQ=255) agaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCg > 1:969715/1‑50 (MQ=255) aaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCg > 1:576932‑M2/12‑50 (MQ=255) aaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCg > 1:2125629‑M2/12‑50 (MQ=255) gaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGt < 1:756565/50‑1 (MQ=255) aagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTc < 1:1872364‑M2/41‑1 (MQ=255) aaTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTc < 1:985827/50‑1 (MQ=255) aaTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTc > 1:4022405/1‑50 (MQ=255) aaTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTc > 1:388279/1‑50 (MQ=255) aaTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTc < 1:691301/50‑1 (MQ=255) aaTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTc < 1:3685955/50‑1 (MQ=255) agagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCg > 1:4094741‑M2/9‑50 (MQ=255) tGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCgg < 1:146476/50‑1 (MQ=255) gagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCgg < 1:3548946‑M2/43‑1 (MQ=255) agagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCgg > 1:4070880‑M2/7‑49 (MQ=255) gagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGa < 1:3161188‑M2/45‑1 (MQ=255) gCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCggg > 1:347625/1‑49 (MQ=255) gCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGa < 1:4490106/50‑1 (MQ=255) cTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGaa > 1:1298189/1‑50 (MQ=255) cTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGaa > 1:2115833/1‑50 (MQ=255) agaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGaa < 1:1291388‑M2/46‑1 (MQ=255) gaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAc < 1:675663‑M2/47‑1 (MQ=255) gaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAc > 1:151471‑M2/4‑50 (MQ=255) gaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAc > 1:4827386‑M2/4‑50 (MQ=255) aGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGt < 1:5585876‑M2/49‑1 (MQ=255) ggggCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACgtg > 1:329724/1‑50 (MQ=255) | AAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTG > NC_000913/4400247‑4400345 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |