| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 263,514 | Δ61,897 bp | [ykfI]–ykgH | 71 genes [ykfI], yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI‑1, insN, eyeA, ykfC, insH‑1, mmuP, mmuM, afuC, afuB, insB‑2, insA‑2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, ecpR, ykgL, ykgO, ykgM, ykgR, ykgP, eaeH, insE‑1, insF‑1, ykgA, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 263514 | 325410 | 61897 | 98 [0] | [0] 99 | [ykfI]–ykgH | [ykfI],yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,insH‑1,mmuP,mmuM,afuC,afuB,insB‑2,insA‑2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,ykgS,insB‑3,insA‑3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,ecpR,ykgL,ykgO,ykgM,ykgR,ykgP,eaeH,insE‑1,insF‑1,ykgA,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 263513 | 0 (0.000) | 92 (1.320) | 62/94 | 0.0 | 100% | coding (157/342 nt) | ykfI | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| ? | NC_000913 | 325411 = | 0 (0.000) | intergenic (‑47/+166) | ykgH/betA | uncharacterized protein YkgH/choline dehydrogenase | |||||
ATAATATATCCAGAGAATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATCA > NC_000913/325363‑325460 | ttctaccagaaaattcacggcatcggctagggtgataccggcatcgata < 1:4835732‑M2/1‑1 (MQ=255)ttctaccagaaaattcacggcatcggctagggtgataccggcatcgata < 1:2037428‑M2/1‑1 (MQ=255)ttctaccagaaaattcacggcatcggctagggtgataccggcatcgatAg > 1:253134‑M2/49‑50 (MQ=255) tctaccagaaaattcacggcatcggctagggtgataccggcatcgatAGt > 1:4867346‑M2/48‑50 (MQ=255) ctaccagaaaattcacggcatcggctagggtgataccggcatcgatAGt < 1:3393961‑M2/3‑1 (MQ=255) ccagaaaattcacggcatcggctagggtgataccggcatcgatAGTc < 1:5559070‑M2/4‑1 (MQ=255) ccagaaaattcacggcatcggctagggtgataccggcatcgatAGTCt < 1:4445291‑M2/5‑1 (MQ=255) ccagaaaattcacggcatcggctagggtgataccggcatcgatAGTCTg > 1:124677‑M2/44‑49 (MQ=255) ccagaaaattcacggcatcggctagggtgataccggcatcgatAGTCTg < 1:5580312‑M2/6‑1 (MQ=255) ccagaaaattcacggcatcggctagggtgataccggcatcgatAGTCTg > 1:898176‑M2/44‑49 (MQ=255) cagaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTa < 1:3073998‑M2/8‑1 (MQ=255) cagaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTa > 1:2138561‑M2/43‑50 (MQ=255) agaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTAt < 1:976592‑M2/9‑1 (MQ=255) agaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTAt < 1:5507825‑M2/9‑1 (MQ=255) agaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTAt < 1:2250984‑M2/9‑1 (MQ=255) gaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTAt > 1:4748862‑M2/41‑49 (MQ=255) aaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTAt > 1:2623565‑M2/40‑48 (MQ=255) aaattcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAg > 1:4875259‑M2/39‑50 (MQ=255) aaattcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAg < 1:4725944‑M2/12‑1 (MQ=255) aattcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAg > 1:2118565‑M2/38‑49 (MQ=255) attcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAgg > 1:4283346‑M2/37‑49 (MQ=255) attcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAgg > 1:962196‑M2/37‑49 (MQ=255) ttcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGaa > 1:769661‑M2/36‑50 (MQ=255) ttcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGaa < 1:1833019‑M2/15‑1 (MQ=255) cacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAAt < 1:3320572‑M2/16‑1 (MQ=255) cacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATg > 1:5181268‑M2/34‑50 (MQ=255) acggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATg < 1:2077079‑M2/17‑1 (MQ=255) acggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGt < 1:753657‑M2/18‑1 (MQ=255) acggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGt > 1:2815522‑M2/33‑50 (MQ=255) acggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGt < 1:2771689‑M2/18‑1 (MQ=255) acggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGt < 1:2461839‑M2/18‑1 (MQ=255) ggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTc < 1:4311378‑M2/20‑1 (MQ=255) gcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCg < 1:1907412‑M2/21‑1 (MQ=255) gcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCg > 1:1481336‑M2/30‑50 (MQ=255) catcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCgg < 1:3482685‑M2/22‑1 (MQ=255) catcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCgg < 1:4486824‑M2/22‑1 (MQ=255) catcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCgg < 1:4341832‑M2/22‑1 (MQ=255) atcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCggg < 1:3800885‑M2/23‑1 (MQ=255) atcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCggg > 1:4937700‑M2/28‑50 (MQ=255) atcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCggg > 1:3365684‑M2/28‑50 (MQ=255) atcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCggg > 1:1234584‑M2/28‑50 (MQ=255) atcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCggg > 1:1567081‑M2/28‑50 (MQ=255) tcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGt < 1:3120436‑M2/24‑1 (MQ=255) tcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGt < 1:5317767‑M2/24‑1 (MQ=255) cggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGt > 1:3332411‑M2/26‑49 (MQ=255) ggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGtt > 1:1525326‑M2/25‑49 (MQ=255) ggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGtt < 1:3967842‑M2/25‑1 (MQ=255) ggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGtt < 1:4111353‑M2/25‑1 (MQ=255) gctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTaa < 1:2443381‑M2/27‑1 (MQ=255) tagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTaaa > 1:2204652‑M2/22‑49 (MQ=255) agggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAata > 1:4890226‑M2/21‑50 (MQ=255) gggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAatat > 1:2533977‑M2/20‑50 (MQ=255) gggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAatat > 1:5434560‑M2/20‑50 (MQ=255) gggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAat < 1:3646760‑M2/29‑1 (MQ=255) ggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAatat > 1:1961417‑M2/19‑49 (MQ=255) ggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATc < 1:4522663‑M2/32‑1 (MQ=255) tgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAg < 1:5289165‑M2/34‑1 (MQ=255) tgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAg < 1:3348078‑M2/34‑1 (MQ=255) tgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAg > 1:4314356‑M2/17‑50 (MQ=255) tgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAg > 1:2565054‑M2/17‑50 (MQ=255) gataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAg > 1:1062406‑M2/16‑49 (MQ=255) ataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGc < 1:4849274‑M2/35‑1 (MQ=255) ataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCa < 1:750733‑M2/36‑1 (MQ=255) taccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaa < 1:4071859‑M2/37‑1 (MQ=255) taccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCa > 1:18752‑M2/14‑49 (MQ=255) taccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCa > 1:4797632‑M2/14‑49 (MQ=255) taccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCa > 1:2632256‑M2/14‑49 (MQ=255) accggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaa > 1:399953‑M2/13‑49 (MQ=255) accggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaa > 1:2188927‑M2/13‑49 (MQ=255) accggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaa > 1:4322147‑M2/13‑49 (MQ=255) ccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaaa < 1:2141974‑M2/39‑1 (MQ=255) ccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaa < 1:963267‑M2/38‑1 (MQ=255) cggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaaaa < 1:4488615‑M2/40‑1 (MQ=255) cggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaaaa < 1:4363404‑M2/40‑1 (MQ=255) cggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaa > 1:55976‑M2/11‑48 (MQ=255) ggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAg < 1:2705980‑M2/41‑1 (MQ=255) catcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGcc < 1:3563540‑M2/43‑1 (MQ=255) catcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGcc > 1:962553‑M2/8‑50 (MQ=255) catcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGcc < 1:4122051‑M2/43‑1 (MQ=255) catcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGcc > 1:3975729‑M2/8‑50 (MQ=255) catcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGcc < 1:3312386‑M2/43‑1 (MQ=255) catcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGcc < 1:2302885‑M2/43‑1 (MQ=255) atcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGccc < 1:4925480‑M2/44‑1 (MQ=255) atcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGccc > 1:1273143‑M2/7‑50 (MQ=255) atcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGccc > 1:1527520‑M2/7‑50 (MQ=255) atcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGccc < 1:566560‑M2/44‑1 (MQ=255) tcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCg < 1:3974903‑M2/45‑1 (MQ=255) tcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCg < 1:1389278‑M2/45‑1 (MQ=255) tcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCg > 1:2045045‑M2/6‑50 (MQ=255) cgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCg > 1:3196113‑M2/5‑49 (MQ=255) cgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCg > 1:1605864‑M2/5‑49 (MQ=255) gatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGc < 1:3837657‑M2/46‑1 (MQ=255) atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAt > 1:2761762‑M2/3‑50 (MQ=255) atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAt > 1:4825796‑M2/3‑50 (MQ=255) tAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAt > 1:2281488‑M2/2‑49 (MQ=255) tAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAt > 1:5022026‑M2/2‑49 (MQ=255) tAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAt > 1:1123872‑M2/2‑49 (MQ=255) tAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATc < 1:2612234‑M2/49‑1 (MQ=255) aGTCTGTATCCGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGcatca > 1:3033841/1‑50 (MQ=255) | ATAATATATCCAGAGAATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATCA > NC_000913/325363‑325460 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |