| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 263,514 | Δ61,897 bp | [ykfI]–ykgH | 71 genes [ykfI], yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI‑1, insN, eyeA, ykfC, insH‑1, mmuP, mmuM, afuC, afuB, insB‑2, insA‑2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, ecpR, ykgL, ykgO, ykgM, ykgR, ykgP, eaeH, insE‑1, insF‑1, ykgA, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 263514 | 325410 | 61897 | 98 [0] | [0] 99 | [ykfI]–ykgH | [ykfI],yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,insH‑1,mmuP,mmuM,afuC,afuB,insB‑2,insA‑2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,ykgS,insB‑3,insA‑3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,ecpR,ykgL,ykgO,ykgM,ykgR,ykgP,eaeH,insE‑1,insF‑1,ykgA,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 263513 | 0 (0.000) | 92 (1.320) | 62/94 | 0.0 | 100% | coding (157/342 nt) | ykfI | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| ? | NC_000913 | 325411 = | 0 (0.000) | intergenic (‑47/+166) | ykgH/betA | uncharacterized protein YkgH/choline dehydrogenase | |||||
TTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATGTGTTCCTTAATCACAGCCTCATTGCAGAATGGCGTGTCGTTTATTGTC > NC_000913/263466‑263562 | ttCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATag > 1:253134‑M1/1‑48 (MQ=255)ttCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATa < 1:4835732‑M1/49‑2 (MQ=255)ttCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATa < 1:2037428‑M1/49‑2 (MQ=255) tCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagt > 1:4867346‑M1/1‑47 (MQ=255) cTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagt < 1:3393961‑M1/49‑4 (MQ=255) ccAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctg > 1:124677‑M1/1‑43 (MQ=255) ccAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctg > 1:898176‑M1/1‑43 (MQ=255) ccAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctg < 1:5580312‑M1/49‑7 (MQ=255) ccAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtct < 1:4445291‑M1/48‑6 (MQ=255) ccAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtc < 1:5559070‑M1/47‑5 (MQ=255) cAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgta > 1:2138561‑M1/1‑42 (MQ=255) cAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgta < 1:3073998‑M1/50‑9 (MQ=255) aGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat < 1:976592‑M1/50‑10 (MQ=255) aGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat < 1:2250984‑M1/50‑10 (MQ=255) aGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat < 1:5507825‑M1/50‑10 (MQ=255) gAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat > 1:4748862‑M1/1‑40 (MQ=255) aaaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat > 1:2623565‑M1/1‑39 (MQ=255) aaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcag > 1:4875259‑M1/1‑38 (MQ=255) aaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcag < 1:4725944‑M1/50‑13 (MQ=255) aaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcag > 1:2118565‑M1/1‑37 (MQ=255) aTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagg > 1:962196‑M1/1‑36 (MQ=255) aTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagg > 1:4283346‑M1/1‑36 (MQ=255) ttCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaa > 1:769661‑M1/1‑35 (MQ=255) ttCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaa < 1:1833019‑M1/50‑16 (MQ=255) cACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatg > 1:5181268‑M1/1‑33 (MQ=255) cACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaat < 1:3320572‑M1/49‑17 (MQ=255) aCGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgt < 1:2461839‑M1/50‑19 (MQ=255) aCGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgt > 1:2815522‑M1/1‑32 (MQ=255) aCGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgt < 1:2771689‑M1/50‑19 (MQ=255) aCGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgt < 1:753657‑M1/50‑19 (MQ=255) aCGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatg < 1:2077079‑M1/49‑18 (MQ=255) ggCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttc < 1:4311378‑M1/50‑21 (MQ=255) gCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcg < 1:1907412‑M1/50‑22 (MQ=255) gCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcg > 1:1481336‑M1/1‑29 (MQ=255) cATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgg < 1:4341832‑M1/50‑23 (MQ=255) cATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgg < 1:4486824‑M1/50‑23 (MQ=255) cATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgg < 1:3482685‑M1/50‑23 (MQ=255) aTCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcggg > 1:4937700‑M1/1‑27 (MQ=255) aTCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcggg < 1:3800885‑M1/50‑24 (MQ=255) aTCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcggg > 1:1234584‑M1/1‑27 (MQ=255) aTCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcggg > 1:1567081‑M1/1‑27 (MQ=255) aTCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcggg > 1:3365684‑M1/1‑27 (MQ=255) tCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggt < 1:5317767‑M1/50‑25 (MQ=255) tCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggt < 1:3120436‑M1/50‑25 (MQ=255) cGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggt > 1:3332411‑M1/1‑25 (MQ=255) ggCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtt < 1:4111353‑M1/49‑26 (MQ=255) ggCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtt < 1:3967842‑M1/49‑26 (MQ=255) ggCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtt > 1:1525326‑M1/1‑24 (MQ=255) gCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaa < 1:2443381‑M1/50‑28 (MQ=255) tAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaa > 1:2204652‑M1/1‑21 (MQ=255) aGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaata > 1:4890226‑M1/1‑20 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat > 1:5434560‑M1/1‑19 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat > 1:2533977‑M1/1‑19 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaat < 1:3646760‑M1/48‑30 (MQ=255) ggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatc < 1:4522663‑M1/50‑33 (MQ=255) ggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat > 1:1961417‑M1/1‑18 (MQ=255) tGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcag > 1:4314356‑M1/1‑16 (MQ=255) tGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcag < 1:5289165‑M1/50‑35 (MQ=255) tGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcag > 1:2565054‑M1/1‑16 (MQ=255) tGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcag < 1:3348078‑M1/50‑35 (MQ=255) gATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcag > 1:1062406‑M1/1‑15 (MQ=255) aTACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagca < 1:750733‑M1/50‑37 (MQ=255) aTACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagc < 1:4849274‑M1/49‑36 (MQ=255) tACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaa < 1:4071859‑M1/50‑38 (MQ=255) tACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagca > 1:18752‑M1/1‑13 (MQ=255) tACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagca > 1:2632256‑M1/1‑13 (MQ=255) tACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagca > 1:4797632‑M1/1‑13 (MQ=255) aCCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaa > 1:399953‑M1/1‑12 (MQ=255) aCCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaa > 1:2188927‑M1/1‑12 (MQ=255) aCCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaa > 1:4322147‑M1/1‑12 (MQ=255) ccGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaa < 1:2141974‑M1/50‑40 (MQ=255) ccGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaa < 1:963267‑M1/49‑39 (MQ=255) cGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaa < 1:4488615‑M1/50‑41 (MQ=255) cGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaa < 1:4363404‑M1/50‑41 (MQ=255) cGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaa > 1:55976‑M1/1‑10 (MQ=255) ggCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaag < 1:2705980‑M1/50‑42 (MQ=255) cATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcc < 1:3312386‑M1/50‑44 (MQ=255) cATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcc > 1:3975729‑M1/1‑7 (MQ=255) cATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcc < 1:3563540‑M1/50‑44 (MQ=255) cATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcc < 1:2302885‑M1/50‑44 (MQ=255) cATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcc > 1:962553‑M1/1‑7 (MQ=255) cATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcc < 1:4122051‑M1/50‑44 (MQ=255) aTCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagccc > 1:1273143‑M1/1‑6 (MQ=255) aTCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagccc > 1:1527520‑M1/1‑6 (MQ=255) aTCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagccc < 1:566560‑M1/50‑45 (MQ=255) aTCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagccc < 1:4925480‑M1/50‑45 (MQ=255) tCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccg > 1:2045045‑M1/1‑5 (MQ=255) tCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccg < 1:3974903‑M1/50‑46 (MQ=255) tCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccg < 1:1389278‑M1/50‑46 (MQ=255) cGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccg > 1:1605864‑M1/1‑4 (MQ=255) cGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccg > 1:3196113‑M1/1‑4 (MQ=255) gATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgc < 1:3837657‑M1/49‑47 (MQ=255) aTagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcat > 1:4825796‑M1/1‑2 (MQ=255) aTagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcat > 1:2761762‑M1/1‑2 (MQ=255) tagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcatc < 1:2612234‑M1/50‑50 (MQ=255) tagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcat > 1:2281488‑M1/1‑1 (MQ=255) tagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcat > 1:5022026‑M1/1‑1 (MQ=255) tagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcat > 1:1123872‑M1/1‑1 (MQ=255) | TTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATGTGTTCCTTAATCACAGCCTCATTGCAGAATGGCGTGTCGTTTATTGTC > NC_000913/263466‑263562 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |