| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,040,502 | Δ73,763 bp | [appX]–[mdtG] | 75 genes [appX], appA, etk, etp, gfcE, gfcD, gfcC, gfcB, gfcA, insA‑4, insB‑4, cspH, cspG, ymcF, ymcE, gnsA, yccM, torS, torT, torR, torC, torA, torD, cbpM, cbpA, yccE, agp, yccJ, wrbA, ymdF, rutG, rutF, rutE, rutD, rutC, rutB, rutA, rutR, putA, ymdG, putP, efeU, efeO, efeB, phoH, pgaD, pgaC, pgaB, pgaA, dgcT, insF‑4, insE‑4, ymdE, ycdU, serX, ghrA, ycdX, ycdY, ycdZ, csgG, csgF, csgE, csgD, csgB, csgA, csgC, ymdA, ymdB, clsC, opgC, opgG, opgH, yceK, msyB, [mdtG] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1040502 | 1114264 | 73763 | 93 [0] | [0] 88 | [appX]–[mdtG] | [appX],appA,etk,etp,gfcE,gfcD,gfcC,gfcB,gfcA,insA‑4,insB‑4,cspH,cspG,ymcF,ymcE,gnsA,yccM,torS,torT,torR,torC,torA,torD,cbpM,cbpA,yccE,agp,yccJ,wrbA,ymdF,rutG,rutF,rutE,rutD,rutC,rutB,rutA,rutR,putA,ymdG,putP,efeU,efeO,efeB,phoH,pgaD,pgaC,pgaB,pgaA,dgcT,insF‑4,insE‑4,ymdE,ycdU,serX,ghrA,ycdX,ycdY,ycdZ,csgG,csgF,csgE,csgD,csgB,csgA,csgC,ymdA,ymdB,clsC,opgC,opgG,opgH,yceK,msyB,[mdtG] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1040501 | 0 (0.000) | 86 (1.210) | 58/96 | 0.0 | 100% | coding (57/93 nt) | appX | small protein AppX |
| ? | NC_000913 | 1114265 = | 0 (0.000) | coding (1226/1227 nt) | mdtG | efflux pump MdtG | |||||
GAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAGGCGAAAAATCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA > NC_000913/1114216‑1114312 | tttactttggttcgtcggcattttgttgatgtgttcgctctccacccttc < 1:3216806‑M2/1‑1 (MQ=255) tactttggttcgtcggcattttgttgatgtgttcgctctccacccttCa < 1:1084639‑M2/2‑1 (MQ=255) tactttggttcgtcggcattttgttgatgtgttcgctctccacccttCa < 1:4358536‑M2/2‑1 (MQ=255) tactttggttcgtcggcattttgttgatgtgttcgctctccacccttCAg > 1:98352‑M2/48‑50 (MQ=255) tactttggttcgtcggcattttgttgatgtgttcgctctccacccttCAg > 1:3704526‑M2/48‑50 (MQ=255) actttggttcgtcggcattttgttgatgtgttcgctctccacccttCAGt > 1:1098158‑M2/47‑50 (MQ=255) ctttggttcgtcggcattttgttgatgtgttcgctctccacccttCAGtt < 1:4020912‑M2/5‑1 (MQ=255) ctttggttcgtcggcattttgttgatgtgttcgctctccacccttCAGt < 1:2507612‑M2/4‑1 (MQ=255) tttggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTc > 1:5185515‑M2/45‑50 (MQ=255) tggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTc < 1:248696‑M2/6‑1 (MQ=255) tggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCg < 1:1427106‑M2/7‑1 (MQ=255) tggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGa > 1:4785651‑M2/43‑50 (MQ=255) tggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGa > 1:784751‑M2/43‑50 (MQ=255) tggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGa > 1:187490‑M2/43‑50 (MQ=255) ggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGa > 1:1707095‑M2/42‑49 (MQ=255) ttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATAc < 1:1818326‑M2/11‑1 (MQ=255) ttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATAc > 1:2187031‑M2/40‑50 (MQ=255) tcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATAcc > 1:2153819‑M2/39‑50 (MQ=255) cgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCt > 1:4358327‑M2/38‑50 (MQ=255) cgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCt > 1:4768532‑M2/38‑50 (MQ=255) gtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCt < 1:4376187‑M2/13‑1 (MQ=255) gtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTg < 1:1729484‑M2/14‑1 (MQ=255) cggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTggg > 1:1985166‑M2/35‑50 (MQ=255) cggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTggg > 1:4375220‑M2/35‑50 (MQ=255) ggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTgggg > 1:1345935‑M2/34‑50 (MQ=255) ggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTgggg > 1:3004274‑M2/34‑50 (MQ=255) ggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTggg < 1:4510794‑M2/16‑1 (MQ=255) cattttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTa > 1:4768330‑M2/32‑50 (MQ=255) cattttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTa > 1:4112254‑M2/32‑50 (MQ=255) attttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTAt > 1:2383441‑M2/31‑50 (MQ=255) ttttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTAtt < 1:3133146‑M2/21‑1 (MQ=255) ttttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTAtt < 1:2686441‑M2/21‑1 (MQ=255) ttttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTAtt > 1:1748409‑M2/30‑50 (MQ=255) ttttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTAtt < 1:499660‑M2/21‑1 (MQ=255) ttttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTAtt > 1:850160‑M2/30‑50 (MQ=255) tttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTc > 1:4944384‑M2/29‑50 (MQ=255) tttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTc > 1:4504165‑M2/29‑50 (MQ=255) ttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTc < 1:4843037‑M2/22‑1 (MQ=255) ttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTc > 1:5019069‑M2/28‑49 (MQ=255) ttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTc < 1:5431725‑M2/22‑1 (MQ=255) tgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcga > 1:3691126‑M2/27‑50 (MQ=255) tgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcg < 1:2858245‑M2/23‑1 (MQ=255) gttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgac > 1:102732‑M2/26‑50 (MQ=255) gttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcga < 1:4059258‑M2/24‑1 (MQ=255) ttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacg < 1:5363800‑M2/26‑1 (MQ=255) ttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgac > 1:2509265‑M2/25‑49 (MQ=255) atgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacgac > 1:1686615‑M2/22‑49 (MQ=255) atgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacgac < 1:3407317‑M2/28‑1 (MQ=255) tgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacgacga < 1:3845574‑M2/30‑1 (MQ=255) tgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacgacga > 1:1930923‑M2/21‑50 (MQ=255) tgttcgctctccgcccttCAGTTCGATACCTGGGGTATTCgacgacgac < 1:2790334‑M2/31‑1 (MQ=255) tgttcgctctccacccttCAGTTCGATACCTGGGGTATTCgacgacgac < 1:81580‑M2/31‑1 (MQ=255) tgttcgctctccacccttCAGTTCGATACCTGGGGTATTCgacgacgac < 1:5224959‑M2/31‑1 (MQ=255) tgttcgctctccacccttCAGTTCGATACCTGGGGTATTCgacgacgac < 1:1754254‑M2/31‑1 (MQ=255) tgttcgctctccacccttCAGTTCGATACCTGGGGTATTCgacgacgac < 1:5366367‑M2/31‑1 (MQ=255) tgttcgctctccacccttCAGTTCGATACCTGGGGTATTCGacgacgacg > 1:4174267‑M2/19‑50 (MQ=255) tgttcgctctccacccttCAGTTCGATACCTGGGGTATTCGacgacgacg > 1:5157590‑M2/19‑50 (MQ=255) tgttcgctctccacccttCAGTTCGATACCTGGGGTATTCGacgacgacg > 1:762040‑M2/19‑50 (MQ=255) gttcgctctccacccttCAGTTCGATACCTGGGGTATTCGacgacgacg > 1:5374982‑M2/18‑49 (MQ=255) ttcgctctccacccttCAGTTCGATACCTGGGGTATTCGacgacgacg > 1:5020528‑M2/17‑48 (MQ=255) ttcgctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTa < 1:4018499‑M2/34‑1 (MQ=255) cgctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAg < 1:572745‑M2/35‑1 (MQ=255) cgctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAg < 1:1046279‑M2/35‑1 (MQ=255) cgctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGa > 1:2406373‑M2/15‑50 (MQ=255) cgctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGa > 1:2117173‑M2/15‑50 (MQ=255) gctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGa < 1:4320887‑M2/36‑1 (MQ=255) gctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGAc > 1:3248250‑M2/14‑50 (MQ=255) gctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGAc > 1:3765834‑M2/14‑50 (MQ=255) ctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACt > 1:1811496‑M2/13‑50 (MQ=255) ctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACt < 1:3941458‑M2/38‑1 (MQ=255) ctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACt < 1:4455969‑M2/38‑1 (MQ=255) ctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACt < 1:3318111‑M2/38‑1 (MQ=255) tctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTg > 1:3269443‑M2/12‑50 (MQ=255) tctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTg > 1:3318833‑M2/12‑50 (MQ=255) tccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTg < 1:4545866‑M2/39‑1 (MQ=255) tccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGtt > 1:5013904‑M2/10‑50 (MQ=255) ccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTc > 1:5543733‑M2/9‑50 (MQ=255) ccacccttCAGTTCGATACCTCGGGTATTCGACGACGACGTAGACTGTTc > 1:3143335‑M2/9‑50 (MQ=255) cacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGtt < 1:4961435‑M2/41‑1 (MQ=255) cacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTc < 1:4474428‑M2/42‑1 (MQ=255) cacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTc > 1:3772057‑M2/8‑49 (MQ=255) cacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTc < 1:5469590‑M2/42‑1 (MQ=255) ccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATg < 1:1419186‑M2/46‑1 (MQ=255) ccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATg < 1:3853187‑M2/46‑1 (MQ=255) cttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATg > 1:1852215‑M2/4‑49 (MQ=255) cttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGa < 1:1395513‑M2/47‑1 (MQ=255) cAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGaa > 1:3690272/1‑48 (MQ=255) cAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGaa > 1:4810325/1‑48 (MQ=255) | GAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAGGCGAAAAATCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA > NC_000913/1114216‑1114312 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |