| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,040,502 | Δ73,763 bp | [appX]–[mdtG] | 75 genes [appX], appA, etk, etp, gfcE, gfcD, gfcC, gfcB, gfcA, insA‑4, insB‑4, cspH, cspG, ymcF, ymcE, gnsA, yccM, torS, torT, torR, torC, torA, torD, cbpM, cbpA, yccE, agp, yccJ, wrbA, ymdF, rutG, rutF, rutE, rutD, rutC, rutB, rutA, rutR, putA, ymdG, putP, efeU, efeO, efeB, phoH, pgaD, pgaC, pgaB, pgaA, dgcT, insF‑4, insE‑4, ymdE, ycdU, serX, ghrA, ycdX, ycdY, ycdZ, csgG, csgF, csgE, csgD, csgB, csgA, csgC, ymdA, ymdB, clsC, opgC, opgG, opgH, yceK, msyB, [mdtG] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1040502 | 1114264 | 73763 | 93 [0] | [0] 88 | [appX]–[mdtG] | [appX],appA,etk,etp,gfcE,gfcD,gfcC,gfcB,gfcA,insA‑4,insB‑4,cspH,cspG,ymcF,ymcE,gnsA,yccM,torS,torT,torR,torC,torA,torD,cbpM,cbpA,yccE,agp,yccJ,wrbA,ymdF,rutG,rutF,rutE,rutD,rutC,rutB,rutA,rutR,putA,ymdG,putP,efeU,efeO,efeB,phoH,pgaD,pgaC,pgaB,pgaA,dgcT,insF‑4,insE‑4,ymdE,ycdU,serX,ghrA,ycdX,ycdY,ycdZ,csgG,csgF,csgE,csgD,csgB,csgA,csgC,ymdA,ymdB,clsC,opgC,opgG,opgH,yceK,msyB,[mdtG] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1040501 | 0 (0.000) | 86 (1.210) | 58/96 | 0.0 | 100% | coding (57/93 nt) | appX | small protein AppX |
| ? | NC_000913 | 1114265 = | 0 (0.000) | coding (1226/1227 nt) | mdtG | efflux pump MdtG | |||||
ATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGC > NC_000913/1040452‑1040548 | aTTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:4907626‑M1/1‑50 (MQ=255)aTTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:4786444‑M1/1‑50 (MQ=255) tttACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTc < 1:3216806‑M1/50‑2 (MQ=255) tttACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:354175‑M1/1‑49 (MQ=255) tttACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:550578‑M1/1‑49 (MQ=255) tttACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:5316810‑M1/1‑49 (MQ=255) tttACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT < 1:4441527‑M1/49‑1 (MQ=255) ttACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:3260238‑M1/1‑48 (MQ=255) tACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcag > 1:3704526‑M1/1‑47 (MQ=255) tACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcag > 1:98352‑M1/1‑47 (MQ=255) tACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTca < 1:1084639‑M1/49‑3 (MQ=255) tACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTca < 1:4358536‑M1/49‑3 (MQ=255) aCTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagt > 1:1098158‑M1/1‑46 (MQ=255) cTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagtt < 1:4020912‑M1/50‑6 (MQ=255) cTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagt < 1:2507612‑M1/49‑5 (MQ=255) tttGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttc > 1:5185515‑M1/1‑44 (MQ=255) tGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcga > 1:4785651‑M1/1‑42 (MQ=255) tGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcga > 1:187490‑M1/1‑42 (MQ=255) tGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcga > 1:784751‑M1/1‑42 (MQ=255) tGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcg < 1:1427106‑M1/49‑8 (MQ=255) tGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttc < 1:248696‑M1/48‑7 (MQ=255) ggTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcga > 1:1707095‑M1/1‑41 (MQ=255) ttCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatac > 1:2187031‑M1/1‑39 (MQ=255) ttCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatac < 1:1818326‑M1/50‑12 (MQ=255) tcgtcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacc > 1:2153819‑M1/1‑38 (MQ=255) cgtcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacct > 1:4358327‑M1/1‑37 (MQ=255) cgtcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacct > 1:4768532‑M1/1‑37 (MQ=255) gtcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctg < 1:1729484‑M1/50‑15 (MQ=255) gtcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacct < 1:4376187‑M1/49‑14 (MQ=255) cgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggg > 1:1985166‑M1/1‑34 (MQ=255) cgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggg > 1:4375220‑M1/1‑34 (MQ=255) ggCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctgggg > 1:3004274‑M1/1‑33 (MQ=255) ggCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctgggg > 1:1345935‑M1/1‑33 (MQ=255) ggCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggg < 1:4510794‑M1/49‑17 (MQ=255) cATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggta > 1:4768330‑M1/1‑31 (MQ=255) cATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggta > 1:4112254‑M1/1‑31 (MQ=255) aTTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtat > 1:2383441‑M1/1‑30 (MQ=255) ttttGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtatt < 1:499660‑M1/50‑22 (MQ=255) ttttGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtatt < 1:2686441‑M1/50‑22 (MQ=255) ttttGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtatt < 1:3133146‑M1/50‑22 (MQ=255) ttttGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtatt > 1:1748409‑M1/1‑29 (MQ=255) ttttGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtatt > 1:850160‑M1/1‑29 (MQ=255) tttGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattc > 1:4944384‑M1/1‑28 (MQ=255) tttGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattc > 1:4504165‑M1/1‑28 (MQ=255) ttgttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattc < 1:4843037‑M1/49‑23 (MQ=255) ttgttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattc > 1:5019069‑M1/1‑27 (MQ=255) ttgttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattc < 1:5431725‑M1/49‑23 (MQ=255) tgttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcga > 1:3691126‑M1/1‑26 (MQ=255) tgttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcg < 1:2858245‑M1/49‑24 (MQ=255) gttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgac > 1:102732‑M1/1‑25 (MQ=255) gttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcga < 1:4059258‑M1/49‑25 (MQ=255) ttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacg < 1:5363800‑M1/50‑27 (MQ=255) ttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgac > 1:2509265‑M1/1‑24 (MQ=255) aTGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgac > 1:1686615‑M1/1‑21 (MQ=255) aTGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgac < 1:3407317‑M1/49‑29 (MQ=255) tgtgTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacga > 1:1930923‑M1/1‑20 (MQ=255) tgtgTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacga < 1:3845574‑M1/50‑31 (MQ=255) tgtTCGCTCTCCGCCCTTcagttcgatacctggggtattcgacgacgac < 1:2790334‑M1/49‑32 (MQ=255) tgtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacg > 1:5157590‑M1/1‑18 (MQ=255) tgtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacg > 1:4174267‑M1/1‑18 (MQ=255) tgtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacg > 1:762040‑M1/1‑18 (MQ=255) tgtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgac < 1:81580‑M1/49‑32 (MQ=255) tgtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgac < 1:1754254‑M1/49‑32 (MQ=255) tgtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgac < 1:5224959‑M1/49‑32 (MQ=255) tgtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgac < 1:5366367‑M1/49‑32 (MQ=255) gtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacg > 1:5374982‑M1/1‑17 (MQ=255) ttCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgta < 1:4018499‑M1/50‑35 (MQ=255) ttCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacg > 1:5020528‑M1/1‑16 (MQ=255) cGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgtaga > 1:2406373‑M1/1‑14 (MQ=255) cGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgtaga > 1:2117173‑M1/1‑14 (MQ=255) cGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgtag < 1:572745‑M1/49‑36 (MQ=255) cGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgtag < 1:1046279‑M1/49‑36 (MQ=255) gCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgtagac > 1:3248250‑M1/1‑13 (MQ=255) gCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgtagac > 1:3765834‑M1/1‑13 (MQ=255) gCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgtaga < 1:4320887‑M1/49‑37 (MQ=255) ctctCCACCCTTcagttcgatacctggggtattcgacgacgacgtagact > 1:1811496‑M1/1‑12 (MQ=255) ctctCCACCCTTcagttcgatacctggggtattcgacgacgacgtagact < 1:4455969‑M1/50‑39 (MQ=255) ctctCCACCCTTcagttcgatacctggggtattcgacgacgacgtagact < 1:3941458‑M1/50‑39 (MQ=255) ctctCCACCCTTcagttcgatacctggggtattcgacgacgacgtagact < 1:3318111‑M1/50‑39 (MQ=255) tctcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactg > 1:3269443‑M1/1‑11 (MQ=255) tctcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactg > 1:3318833‑M1/1‑11 (MQ=255) tcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactgtt > 1:5013904‑M1/1‑9 (MQ=255) tcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactg < 1:4545866‑M1/48‑40 (MQ=255) ccACCCTTcagttcgatacctggggtattcgacgacgacgtagactgttc > 1:5543733‑M1/1‑8 (MQ=255) ccACCCTTcagttcgatacctcgggtattcgacgacgacgtagactgttc > 1:3143335‑M1/1‑8 (MQ=255) cACCCTTcagttcgatacctggggtattcgacgacgacgtagactgttc > 1:3772057‑M1/1‑7 (MQ=255) cACCCTTcagttcgatacctggggtattcgacgacgacgtagactgttc < 1:5469590‑M1/49‑43 (MQ=255) cACCCTTcagttcgatacctggggtattcgacgacgacgtagactgttc < 1:4474428‑M1/49‑43 (MQ=255) cACCCTTcagttcgatacctggggtattcgacgacgacgtagactgtt < 1:4961435‑M1/48‑42 (MQ=255) ccTTcagttcgatacctggggtattcgacgacgacgtagactgttccatg < 1:3853187‑M1/50‑47 (MQ=255) ccTTcagttcgatacctggggtattcgacgacgacgtagactgttccatg < 1:1419186‑M1/50‑47 (MQ=255) cTTcagttcgatacctggggtattcgacgacgacgtagactgttccatga < 1:1395513‑M1/50‑48 (MQ=255) cTTcagttcgatacctggggtattcgacgacgacgtagactgttccatg > 1:1852215‑M1/1‑3 (MQ=255) | ATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGC > NC_000913/1040452‑1040548 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |