| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,204,350 | Δ32,368 bp | yehL–preA | 30 genes yehL, yehM, yehP, yehQ, yehR, yehS, btsR, btsS, mlrA, yohO, yehW, yehX, yehY, osmF, bglX, dld, pbpG, yohC, yohD, yohF, mdtQ, yohP, dusC, yohJ, yohK, cdd, sanA, yeiS, preT, preA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2204350 | 2236717 | 32368 | 61 [0] | [0] 61 | yehL–preA | yehL,yehM,yehP,yehQ,yehR,yehS,btsR,btsS,mlrA,yohO,yehW,yehX,yehY,osmF,bglX,dld,pbpG,yohC,yohD,yohF,mdtQ,yohP,dusC,yohJ,yohK,cdd,sanA,yeiS,preT,preA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2204349 | 0 (0.000) | 61 (0.840) | 46/98 | 0.0 | 100% | intergenic (+60/‑247) | yehK/yehL | uncharacterized protein YehK/putative AAA(+) MoxR family ATPase YehL |
| ? | NC_000913 | 2236718 = | 0 (0.000) | intergenic (+218/+25) | preA/mglC | NAD‑dependent dihydropyrimidine dehydrogenase subunit PreA/D‑galactose/methyl‑galactoside ABC transporter membrane subunit | |||||
TTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAG > NC_000913/2236671‑2236766 | attcaaattggtccgatccggcgcaacgtcccaatggcctggattatTg < 1:3652901‑M2/2‑1 (MQ=255)attcaaattggtccgatccggcgcaacgtcccaatggcctggattatTGa < 1:1452903‑M2/3‑1 (MQ=255)attcaaattggtccgatccggcgcaacgtcccaatggcctggattatTGa > 1:2899946‑M2/48‑50 (MQ=255) ttcaaattggtccgatccggcgcaacgtcccaatggcctggattatTGAc > 1:3430334‑M2/47‑50 (MQ=255) tcaaattggtccgatccggcgcaacgtcccaatggcctggattatTGAcc > 1:57161‑M2/46‑50 (MQ=255) caaattggtccgatccggcgcaacgtcccaatggcctggattatTGAcc > 1:4203474‑M2/45‑49 (MQ=255) caaattggtccgatccggcgcaacgtcccaatggcctggattatTGAcc > 1:1141587‑M2/45‑49 (MQ=255) aaattggtccgatccggcgcaacgtcccaatggcctggattatTGACCGa < 1:5212453‑M2/7‑1 (MQ=255) aattggtccgatccggcgcaacgtcccaatggcctggattatTGACCGaa > 1:2149504‑M2/43‑50 (MQ=255) attggtccgatccggcgcaacgtcccaatggcctggattatTGACCGAAt > 1:1555645‑M2/42‑50 (MQ=255) attggtccgatccggcgcaacgtcccaatggcctggattatTGACCGAAt < 1:4273812‑M2/9‑1 (MQ=255) ttggtccgatccggcgcaacgtcccaatggcctggattatTGACCGAATg < 1:4854374‑M2/10‑1 (MQ=255) tggtccgatccggcgcaacgtcccaatggcctggattatTGACCGAATGc > 1:1504288‑M2/40‑50 (MQ=255) ggtccgatccggcgcaacgtcccaatggcctggattatTGACCGAATGc < 1:1524663‑M2/11‑1 (MQ=255) gtccgatccggcgcaacgtcccaatggcctggattatTGACCGAATGCg > 1:2621230‑M2/38‑49 (MQ=255) tccgatccggcgcaacgtcccaatggcctggattatTGACCGAATGCGGa > 1:4022647‑M2/37‑50 (MQ=255) ccgatccggcgcaacgtcccaatggcctggattatTGACCGAATGCGGAc > 1:5558335‑M2/36‑50 (MQ=255) cgatccggcgcaacgtcccaatggcctggattatTGACCGAATGCGGAcc < 1:5135137‑M2/16‑1 (MQ=255) cgatccggcgcaacgtcccaatggcctggattatTGACCGAATGCGGAc > 1:4391268‑M2/35‑49 (MQ=255) atccggcgcaacgtcccaatggcctggattatTGACCGAATGCGGACcac < 1:4005575‑M2/18‑1 (MQ=255) atccggcgcaacgtcccaatggcctggattatTGACCGAATGCGGACcac < 1:1710872‑M2/18‑1 (MQ=255) tccggcgcaacgtcccaatggcctggattatTGACCGAATGCGGACcaca < 1:3379177‑M2/19‑1 (MQ=255) ccggcgcaacgtcccaatggcctggattatTGACCGAATGCGGACCACAt > 1:5116169‑M2/31‑50 (MQ=255) cggcgcaacgtcccaatggcctggattatTGACCGAATGCGGACCACAtt < 1:3277855‑M2/21‑1 (MQ=255) cggcgcaacgtcccaatggcctggattatTGACCGAATGCGGACCACAtt < 1:1081190‑M2/21‑1 (MQ=255) cggcgcaacgtcccaatggcctggattatTGACCGAATGCGGACCACAtt > 1:2544059‑M2/30‑50 (MQ=255) cggcgcaacgtcccaatggcctggattatTGACCGAATGCGGACCACAtt < 1:2065380‑M2/21‑1 (MQ=255) cggcgcaacgtcccaatggcctggattatTGACCGAATGCGGACCACAtt < 1:2004376‑M2/21‑1 (MQ=255) cggcgcaacgtcccaatggcctggattatTGACCGAATGCGGACCACAtt < 1:762651‑M2/21‑1 (MQ=255) ggcgcaacgtcccaatggcctggattatTGACCGAATGCGGACCACATTc < 1:3017439‑M2/22‑1 (MQ=255) gcaacgtcccaatggcctggattatTGACCGAATGCGGACCACATTcaca > 1:2022030‑M2/26‑50 (MQ=255) gcaacgtcccaatggcctggattatTGACCGAATGCGGACCACATTcaca > 1:1950265‑M2/26‑50 (MQ=255) aacgtcccaatggcctggattatTGACCGAATGCGGACCACATTCAcatc < 1:2818046‑M2/27‑1 (MQ=255) aacgtcccaatggcctggattatTGACCGAATGCGGACCACATTCAcat > 1:208851‑M2/24‑49 (MQ=255) acgtcccaatggcctggattatTGACCGAATGCGGACCACATTCAcatca < 1:1722081‑M2/28‑1 (MQ=255) tcccaatggcctggattatTGACCGAATGCGGACCACATTCACATCAttt < 1:3990313‑M2/31‑1 (MQ=255) ccaatggcctggattatTGACCGAATGCGGACCACATTCACATCATTTCt < 1:3078859‑M2/33‑1 (MQ=255) ccaatggcctggattatTGACCGAATGCGGACCACATTCACATCATTTCt < 1:1817954‑M2/33‑1 (MQ=255) aatggcctggattatTGACCGAATGCGGACCACATTCACATCATTTCTTa > 1:951917‑M2/16‑50 (MQ=255) atggcctggattatTGACCGAATGCGGACCACATTCACATCATTTCTTAc < 1:2862327‑M2/36‑1 (MQ=255) tggcctggattatTGACCGAATGCGGACCACATTCACATCATTTCTTAcg > 1:2904239‑M2/14‑50 (MQ=255) tggcctggattatTGACCGAATGCGGACCACATTCACATCATTTCTTAcg < 1:118398‑M2/37‑1 (MQ=255) gcctggattatTGACCGAATGCGGACCACATTCACATCATTTCTTAcgcg < 1:3690610‑M2/39‑1 (MQ=255) gcctggattatTGACCGAATGCGGACCACATTCACATCATTTCTTAcgc < 1:2804526‑M2/38‑1 (MQ=255) gcctggattatTGACCGAATGCGGACCACATTCACATCATTTCTTAcgc < 1:2675807‑M2/38‑1 (MQ=255) cctggattatTGACCGAATGCGGACCACATTCACATCATTTCTTAcgcgc < 1:1801078‑M2/40‑1 (MQ=255) ggattatTGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTa > 1:397393‑M2/8‑50 (MQ=255) ggattatTGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTa > 1:4819366‑M2/8‑50 (MQ=255) ggattatTGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTa > 1:2559491‑M2/8‑50 (MQ=255) gattatTGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGt < 1:4098365‑M2/42‑1 (MQ=255) gattatTGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTa < 1:3696576‑M2/43‑1 (MQ=255) gattatTGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTa < 1:4519759‑M2/43‑1 (MQ=255) gattatTGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTAt < 1:1052000‑M2/44‑1 (MQ=255) gattatTGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTAt > 1:2555630‑M2/7‑50 (MQ=255) gattatTGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTAt < 1:4474904‑M2/44‑1 (MQ=255) attatTGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTAtt > 1:475909‑M2/6‑50 (MQ=255) attatTGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTAtt > 1:2179275‑M2/6‑50 (MQ=255) attatTGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTAtt > 1:2863909‑M2/6‑50 (MQ=255) atTGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTAttt > 1:119595‑M2/3‑48 (MQ=255) atTGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTc < 1:4825411‑M2/47‑1 (MQ=255) tTGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAg < 1:3945359‑M2/49‑1 (MQ=255) | TTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAG > NC_000913/2236671‑2236766 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |