| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,286,401 | Δ3,780 bp | [yejO]–[yejO] | [yejO], insH‑8, [yejO] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2286401 | 2290180 | 3780 | 96 [0] | [0] 97 | [yejO]–[yejO] | [yejO],insH‑8,[yejO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2286400 | 0 (0.000) | 95 (1.310) | 65/98 | 0.0 | 100% | pseudogene (2515/2525 nt) | yejO | adhesin‑like autotransporter YejO |
| ? | NC_000913 | 2290181 = | 0 (0.000) | intergenic (‑1/‑319) | yejO/narP | adhesin‑like autotransporter YejO/DNA‑binding transcriptional dual regulator NarP | |||||
GAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAG > NC_000913/2290132‑2290229 | cagaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct > 1:103918‑M2/50‑50 (MQ=255)cagaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct > 1:1204722‑M2/50‑50 (MQ=255)cagaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct < 1:2919525‑M2/1‑1 (MQ=255) agaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct > 1:4263601‑M2/49‑49 (MQ=255) agaccgtgacacatcacagcctgtttattttctgttatcagaacgtccTg < 1:1432279‑M2/2‑1 (MQ=255) gaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct > 1:1190316‑M2/48‑48 (MQ=255) gaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct > 1:4971239‑M2/48‑48 (MQ=255) gaccgtgacacatcacagcctgtttattttctgttatcagaacgtccTGa < 1:1249003‑M2/3‑1 (MQ=255) accgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAg < 1:2201297‑M2/4‑1 (MQ=255) ccgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGc < 1:3525164‑M2/5‑1 (MQ=255) cgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCt > 1:2315423‑M2/45‑50 (MQ=255) cgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCt > 1:3278979‑M2/45‑50 (MQ=255) cgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCt > 1:1040100‑M2/45‑50 (MQ=255) gtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCtt < 1:1644015‑M2/7‑1 (MQ=255) gtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCtt < 1:3774103‑M2/7‑1 (MQ=255) gtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCtt < 1:5212575‑M2/7‑1 (MQ=255) gtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCtt < 1:1386679‑M2/7‑1 (MQ=255) gtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCtt < 1:2677727‑M2/7‑1 (MQ=255) gacacatcacagcctgtttattttctgttatcagaacgtccTGAGCttt > 1:3345766‑M2/42‑49 (MQ=255) gacacatcacagcctgtttattttctgttatcagaacgtccTGAGCttt > 1:3054154‑M2/42‑49 (MQ=255) acacatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTc < 1:958168‑M2/9‑1 (MQ=255) acacatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCa < 1:3919235‑M2/10‑1 (MQ=255) cacatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCAt < 1:4298877‑M2/11‑1 (MQ=255) cacatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCAt < 1:2461151‑M2/11‑1 (MQ=255) cacatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCAt < 1:2486107‑M2/11‑1 (MQ=255) cacatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCAt > 1:2716592‑M2/40‑50 (MQ=255) acatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATc < 1:2405821‑M2/12‑1 (MQ=255) acatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATc < 1:570113‑M2/12‑1 (MQ=255) atcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCt < 1:2989654‑M2/14‑1 (MQ=255) tcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTa < 1:2371326‑M2/15‑1 (MQ=255) tcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTa > 1:1187580‑M2/36‑50 (MQ=255) tcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTa > 1:3300780‑M2/36‑50 (MQ=255) cacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTAt > 1:4964655‑M2/35‑50 (MQ=255) cacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTAt > 1:2694536‑M2/35‑50 (MQ=255) acagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTAt > 1:3257561‑M2/34‑49 (MQ=255) acagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTAt > 1:4987146‑M2/34‑49 (MQ=255) acagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTAt < 1:5568178‑M2/16‑1 (MQ=255) acagcctgtttattttctgttatcagaacgtccTAAGCTTTCATCCTAt < 1:3446973‑M2/16‑1 (MQ=255) cagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGa < 1:2588616‑M2/18‑1 (MQ=255) cagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGa < 1:2791528‑M2/18‑1 (MQ=255) cagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGa < 1:1410090‑M2/18‑1 (MQ=255) agcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGaa < 1:3126764‑M2/19‑1 (MQ=255) agcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGaa < 1:2111166‑M2/19‑1 (MQ=255) agcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGa > 1:2524173‑M2/32‑49 (MQ=255) gcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGaaa > 1:2437116‑M2/31‑50 (MQ=255) gcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGaaa < 1:2527169‑M2/20‑1 (MQ=255) cctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaat > 1:4922188‑M2/30‑50 (MQ=255) ctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaatt < 1:807147‑M2/22‑1 (MQ=255) ctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaatt < 1:4216252‑M2/22‑1 (MQ=255) ctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaat > 1:4039956‑M2/29‑49 (MQ=255) tgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaatt > 1:1531288‑M2/28‑49 (MQ=255) tttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaa < 1:4182632‑M2/24‑1 (MQ=255) ttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaatt > 1:442212‑M2/25‑50 (MQ=255) ttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaatt > 1:4100961‑M2/25‑50 (MQ=255) tattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaatt < 1:4554101‑M2/26‑1 (MQ=255) tattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaatt < 1:171698‑M2/26‑1 (MQ=255) tattttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTg > 1:5116726‑M2/24‑50 (MQ=255) attttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTg < 1:25141‑M2/27‑1 (MQ=255) attttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGc > 1:464861‑M2/23‑50 (MQ=255) attttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGc > 1:2963814‑M2/23‑50 (MQ=255) ttttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGc < 1:4497829‑M2/28‑1 (MQ=255) ttttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCt > 1:1460455‑M2/22‑50 (MQ=255) ttttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCt < 1:2614535‑M2/29‑1 (MQ=255) tttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTg > 1:4724318‑M2/21‑50 (MQ=255) ttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTg < 1:2619727‑M2/30‑1 (MQ=255) ttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGt > 1:4000919‑M2/20‑50 (MQ=255) tctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGt > 1:874186‑M2/19‑49 (MQ=255) tctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGt < 1:438565‑M2/31‑1 (MQ=255) tctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGt < 1:5312732‑M2/31‑1 (MQ=255) ctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGtt > 1:944226‑M2/18‑49 (MQ=255) ctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGtt < 1:5275451‑M2/32‑1 (MQ=255) ctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGtt < 1:2019676‑M2/32‑1 (MQ=255) tgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTa > 1:4204577‑M2/17‑49 (MQ=255) gttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaa > 1:2456244‑M2/16‑49 (MQ=255) gttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaa > 1:4570381‑M2/16‑49 (MQ=255) ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaa < 1:3677769‑M2/35‑1 (MQ=255) ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaa < 1:3865614‑M2/35‑1 (MQ=255) ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTa < 1:922401‑M2/33‑1 (MQ=255) ttatcagaacgtccTGAGCTTTCATCCTATGAAAGTAATTGCTGTTaaaa < 1:2970820‑M2/36‑1 (MQ=255) atcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAg > 1:5138574‑M2/13‑49 (MQ=255) atcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAg < 1:2953729‑M2/37‑1 (MQ=255) cagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAt > 1:722440‑M2/11‑50 (MQ=255) agaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAtt > 1:3553183‑M2/10‑50 (MQ=255) gaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTg < 1:3520721‑M2/42‑1 (MQ=255) aacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTgg < 1:2050096‑M2/43‑1 (MQ=255) aacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTgg > 1:3102091‑M2/8‑50 (MQ=255) aacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTgg < 1:339198‑M2/43‑1 (MQ=255) acgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTggg > 1:3099282‑M2/7‑50 (MQ=255) cgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGt < 1:1510978‑M2/45‑1 (MQ=255) cgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGt < 1:2334882‑M2/45‑1 (MQ=255) gtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTa < 1:2894389‑M2/46‑1 (MQ=255) gtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTa > 1:3575798‑M2/5‑50 (MQ=255) tccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTAc < 1:2039194‑M2/47‑1 (MQ=255) cTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTa > 1:3119150‑M2/2‑47 (MQ=255) cTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTa > 1:4269214‑M2/2‑47 (MQ=255) tGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAg > 1:2037534/1‑49 (MQ=255) tGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAg > 1:2655640/1‑49 (MQ=255) | GAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAG > NC_000913/2290132‑2290229 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |