BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	2,286,401	Δ3,780 bp		[yejO]–[yejO]	[yejO], insH‑8, [yejO]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2286401	2290180	3780	96 [0]	[0] 97	[yejO]–[yejO]	[yejO],insH‑8,[yejO]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2286400	0 (0.000)	95 (1.310)	65/98	0.0	100%	pseudogene (2515/2525 nt)	yejO	adhesin‑like autotransporter YejO
*	?	NC_000913	2290181 =	0 (0.000)	95 (1.310)	65/98	0.0	100%	intergenic (‑1/‑319)	yejO/narP	adhesin‑like autotransporter YejO/DNA‑binding transcriptional dual regulator NarP

ACAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACCCGCCTGAGTATTCCACGGCGATTCTACCCCTGCGCCA  >  NC_000913/2286351‑2286447

aCAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTcc                                                 <  1:3463366/50‑1 (MQ=255)

 cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt                                                >  1:103918‑M1/1‑49 (MQ=255)

 cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt                                                >  1:1204722‑M1/1‑49 (MQ=255)

 cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt                                                <  1:2919525‑M1/50‑2 (MQ=255)

  aGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtg                                               <  1:1432279‑M1/50‑3 (MQ=255)

  aGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt                                                >  1:4263601‑M1/1‑48 (MQ=255)

   gACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtga                                              <  1:1249003‑M1/50‑4 (MQ=255)

   gACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt                                                >  1:1190316‑M1/1‑47 (MQ=255)

   gACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt                                                >  1:4971239‑M1/1‑47 (MQ=255)

    aCCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgag                                             <  1:2201297‑M1/50‑5 (MQ=255)

     ccGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagc                                            <  1:3525164‑M1/50‑6 (MQ=255)

      cGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagct                                           >  1:1040100‑M1/1‑44 (MQ=255)

      cGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagct                                           >  1:2315423‑M1/1‑44 (MQ=255)

      cGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagct                                           >  1:3278979‑M1/1‑44 (MQ=255)

       gTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctt                                          <  1:2677727‑M1/50‑8 (MQ=255)

       gTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctt                                          <  1:3774103‑M1/50‑8 (MQ=255)

       gTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctt                                          <  1:1644015‑M1/50‑8 (MQ=255)

       gTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctt                                          <  1:5212575‑M1/50‑8 (MQ=255)

       gTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctt                                          <  1:1386679‑M1/50‑8 (MQ=255)

         gACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagcttt                                         >  1:3345766‑M1/1‑41 (MQ=255)

         gACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagcttt                                         >  1:3054154‑M1/1‑41 (MQ=255)

          acacATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttca                                       <  1:3919235‑M1/50‑11 (MQ=255)

          acacATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttc                                        <  1:958168‑M1/49‑10 (MQ=255)

           cacaTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcat                                      <  1:4298877‑M1/50‑12 (MQ=255)

           cacaTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcat                                      <  1:2461151‑M1/50‑12 (MQ=255)

           cacaTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcat                                      <  1:2486107‑M1/50‑12 (MQ=255)

           cacaTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcat                                      >  1:2716592‑M1/1‑39 (MQ=255)

            acaTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatc                                     <  1:570113‑M1/50‑13 (MQ=255)

            acaTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatc                                     <  1:2405821‑M1/50‑13 (MQ=255)

              aTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcct                                   <  1:2989654‑M1/50‑15 (MQ=255)

               tCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatccta                                  >  1:3300780‑M1/1‑35 (MQ=255)

               tCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatccta                                  <  1:2371326‑M1/50‑16 (MQ=255)

               tCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatccta                                  >  1:1187580‑M1/1‑35 (MQ=255)

                cacaGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctat                                 >  1:2694536‑M1/1‑34 (MQ=255)

                cacaGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctat                                 >  1:4964655‑M1/1‑34 (MQ=255)

                 acaGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctat                                 >  1:4987146‑M1/1‑33 (MQ=255)

                 acaGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctat                                 >  1:3257561‑M1/1‑33 (MQ=255)

                 acaGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctat                                 <  1:5568178‑M1/49‑17 (MQ=255)

                 acaGCCTGTTTATTTTCTGTTATCAGAACGTCCtaagctttcatcctat                                 <  1:3446973‑M1/49‑17 (MQ=255)

                  caGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatga                               <  1:1410090‑M1/50‑19 (MQ=255)

                  caGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatga                               <  1:2791528‑M1/50‑19 (MQ=255)

                  caGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatga                               <  1:2588616‑M1/50‑19 (MQ=255)

                   aGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaa                              <  1:2111166‑M1/50‑20 (MQ=255)

                   aGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaa                              <  1:3126764‑M1/50‑20 (MQ=255)

                   aGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatga                               >  1:2524173‑M1/1‑31 (MQ=255)

                    gCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaa                             >  1:2437116‑M1/1‑30 (MQ=255)

                    gCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaa                             <  1:2527169‑M1/50‑21 (MQ=255)

                     ccTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat                            >  1:4922188‑M1/1‑29 (MQ=255)

                      cTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaatt                           <  1:807147‑M1/50‑23 (MQ=255)

                      cTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaatt                           <  1:4216252‑M1/50‑23 (MQ=255)

                      cTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat                            >  1:4039956‑M1/1‑28 (MQ=255)

                       tGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaatt                           >  1:1531288‑M1/1‑27 (MQ=255)

                         tttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaa                         <  1:4182632‑M1/49‑25 (MQ=255)

                          ttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaatt                       >  1:442212‑M1/1‑24 (MQ=255)

                          ttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaatt                       >  1:4100961‑M1/1‑24 (MQ=255)

                           tATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattg                      >  1:5116726‑M1/1‑23 (MQ=255)

                           tATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaatt                       <  1:4554101‑M1/49‑27 (MQ=255)

                           tATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaatt                       <  1:171698‑M1/49‑27 (MQ=255)

                            aTTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgc                     >  1:2963814‑M1/1‑22 (MQ=255)

                            aTTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgc                     >  1:464861‑M1/1‑22 (MQ=255)

                            aTTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattg                      <  1:25141‑M1/49‑28 (MQ=255)

                             ttttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgct                    >  1:1460455‑M1/1‑21 (MQ=255)

                             ttttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgct                    <  1:2614535‑M1/50‑30 (MQ=255)

                             ttttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgc                     <  1:4497829‑M1/49‑29 (MQ=255)

                              tttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctg                   >  1:4724318‑M1/1‑20 (MQ=255)

                               ttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgt                  >  1:4000919‑M1/1‑19 (MQ=255)

                               ttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctg                   <  1:2619727‑M1/49‑31 (MQ=255)

                                tCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgt                  <  1:5312732‑M1/49‑32 (MQ=255)

                                tCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgt                  >  1:874186‑M1/1‑18 (MQ=255)

                                tCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgt                  <  1:438565‑M1/49‑32 (MQ=255)

                                 cTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtt                 >  1:944226‑M1/1‑17 (MQ=255)

                                 cTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtt                 <  1:5275451‑M1/49‑33 (MQ=255)

                                 cTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtt                 <  1:2019676‑M1/49‑33 (MQ=255)

                                  tGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtta                >  1:4204577‑M1/1‑16 (MQ=255)

                                   gTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaa               >  1:4570381‑M1/1‑15 (MQ=255)

                                   gTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaa               >  1:2456244‑M1/1‑15 (MQ=255)

                                    ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaa              <  1:3865614‑M1/49‑36 (MQ=255)

                                    ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaa              <  1:3677769‑M1/49‑36 (MQ=255)

                                    ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtta                <  1:922401‑M1/47‑34 (MQ=255)

                                    ttATCAGAACGTCCtgagctttcatcctatgaaagtaattgctgttaaaa             <  1:2970820‑M1/50‑37 (MQ=255)

                                      aTCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag            <  1:2953729‑M1/49‑38 (MQ=255)

                                      aTCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag            >  1:5138574‑M1/1‑12 (MQ=255)

                                        cAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcat         >  1:722440‑M1/1‑10 (MQ=255)

                                         aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcatt        >  1:3553183‑M1/1‑9 (MQ=255)

                                          gAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattg       <  1:3520721‑M1/50‑43 (MQ=255)

                                           aaCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgg      <  1:339198‑M1/50‑44 (MQ=255)

                                           aaCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgg      <  1:2050096‑M1/50‑44 (MQ=255)

                                           aaCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgg      >  1:3102091‑M1/1‑7 (MQ=255)

                                            aCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattggg     >  1:3099282‑M1/1‑6 (MQ=255)

                                             cGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggt    <  1:1510978‑M1/50‑46 (MQ=255)

                                             cGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggt    <  1:2334882‑M1/50‑46 (MQ=255)

                                              gTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggta   >  1:3575798‑M1/1‑4 (MQ=255)

                                              gTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggta   <  1:2894389‑M1/50‑47 (MQ=255)

                                               tCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggtac  <  1:2039194‑M1/50‑48 (MQ=255)

                                                 ctgagctttcatcctatgaaattaattgctgttaaaagcattgggta   >  1:3119150‑M1/1‑1 (MQ=255)

                                                 ctgagctttcatcctatgaaattaattgctgttaaaagcattgggta   >  1:4269214‑M1/1‑1 (MQ=255)

ACAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACCCGCCTGAGTATTCCACGGCGATTCTACCCCTGCGCCA  >  NC_000913/2286351‑2286447

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`